Gene detail

Detail information of GWHGAAZE025479

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276030.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Vitis vinifera]
COG	YP_004775215.1	4E-35	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	2E-172	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|A5BSX9\|A5BSX9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68268.1}
TAIR10	AT3G02130.1	1E-98	receptor-like protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61775013	61778664	-
GWHAAZE00000007	mRNA	61775013	61778664	-
GWHAAZE00000007	exon	61775013	61775091	-
GWHAAZE00000007	exon	61775193	61775272	-
GWHAAZE00000007	exon	61775662	61775841	-
GWHAAZE00000007	exon	61776169	61778664	-
GWHAAZE00000007	CDS	61776169	61778664	-
GWHAAZE00000007	CDS	61775662	61775841	-
GWHAAZE00000007	CDS	61775193	61775272	-
GWHAAZE00000007	CDS	61775013	61775091	-

Transcript Sequence
>GWHTAAZE025513 ATGGACCCTTATAATCTTCTCTCTAACTGGACCCCTCTCTCCAATCCCTGCTCCTGGTCCGGTATCCACTGCGACCCTCTTTCCGGCAGGGTCATTTCTCTCAACCTCACCGGAAACCTCCACGGAAAACTCCCGTCCTCCATTGGAAACCTCACCGACCTCCAAATCCTATCCATTCCTCACAATTTTTTCTCCGGCGATATTCCGGCAGAATTAGGGCAAATCCGGTCACTGGAAGTACTAGAGCTTCAAGGAAATAATTTCTCCGGAAACATTCCTTATCAGATAAGATACTTCTCTTCTCTTCGAATACTTAATTTATCTTATAATTCCCTTTCCGGCCAGATTCCTGCCCGTTTCATCGGTATGGATGGGAAATTAAATATGCTAGATTTATCGAATAATCAGCTCTCCGGCTCATTTGGATTTGATAAGTTGGGTAACTGCGAGAATTTGAATTATTTGAAGCTCTCTAATAATATATTTCTTGATGATATTCCCTCGGAAATTGGAAATTGCAAGAACTTGAGGACTCTTCTTCTTGATGGCAACATTTTCCAAGGAAAGATTCCATTAGATATTGGCCGGATGTCAGAACTTGTGATTCTTGATTTGTCTAGGAACAGTCTTACTGGTAGGATTCCTAGAGAGCTAGCAAATTGTTCTAAGCTTTCCGTTGTTGTGTTCACCAATTTAGTTGATTTTGGATCTACTGGTACTGAAGATATTGATGTAGATGGTAACATGGTGGATATTTATAGAGGCGAATTCAATGCCTTTGATGGAGGTTTACCGAACGAGCTATTGTTGCTTCCCAATCTTGAGATGATTTGGGCTCCAAGAGCAAATCTCCGTGGACACTTGCCCAGTAACTGGAGCGAATGGTGCTCACTTAGGGTTCTTAATTTGGGGCAAAATTATATTAGTGGTGAAGTACCAGTGAGCATAGCAATGTGTAAGAATCTTACTTTCTTGGATTTGAGTTCAAATAGTTTGACAGGGTACTTGCCTTTGCAGCTGCGAGTTCCGTGTATGGTATACTTCAATGTAAGCAAGAATTCATTATCTGGCATTCTTCCAGAATTTGGGAAAGACTGTGATGGCATTAGCATGATTTCGTTTAAAGATGAATACATTCAGAACGCATACTCTAACATTCTTGTTTGGGGTTATCAGATGGCCACCCTATTGGGATCAACCAATGATGATAACTTTGTAGTTACCCATGACTTCAGTTGGAATAAATTCAACGGTTCGCTACCTACGTTTTCAATTGGAGATGAGTTCTTGGTTGTTAATGGTAAAGCTTCGTATACGCTGCTGCTCAATAAGAATAAGTTTTCCGGGTCCATCCCTGTTGTCTTATCTTCAAAATGTAATGATCTACAGAGTTTTTCAGTTAATCTGAGTGTGAACCATATCTCCGGTAGGATACATCCAGCATTTCTTCGTAATTGTTCAAAGTTGAAAATTTTTGAAGCTGAGGATAATCGCATTGGTGGGTCAATTTCTCATGTGATAGGCCATTTGAAGTTGCTTCAACATCTTGACTTAAGACAGAACAGGCTTTTTGGATCCTTGCCTGCTGAAATTGGGGAGTTGAAGGATCTGAAATGGATTCTACTTGGAGAGAACAATTTGACAGGATCAATTCCAGCCCAGCTTGGTAAATTGAGGTCTCTCAGTGTTTTAGATCTATCAAAGAATGATTTGACAGGATCGATACCTGAAGCACTGTCAAATGCCACAAATCTTGAAATTCTATTGCTCCATCACAATACACTTTCTGGGAAGATACCTTGGTCTTTCTCAAACCTCAACAATCTTTCTCTGATGGACCTTTCTTTCAATAACCTTTCAGGTCCCATCCCACATCTTCAACACCCAATTGATTGTGATAGCTTTAGAGGGAATATTTTCATCCAACCATGCCCAGATCAAAATGCGGCACCACCGGCTAAGCTTCCAGTGCCGCTTGAAGTTCAAAAGTGGCACAGTCAGAGTAAATTGAGGTCATTTGTAATAGCAATGGCCACTTCTGCATCAGTTGTACTCTTTATTCTTTCTGTGATAGTTCTTGTCCTCGTTCTTGGAAGGAGAAAGCTCAGTAGACTCGCTAGTCTAAGGAAGAAAGTTTTAGTAACCTTTGTGGATACTCCAATTGAACTGAATTACGACAACGTGGTCGGAGCAACCGGGAATTTCAGCAACCGAAACCTGATTGGTACAGGTGGCTTCGGATCAACTTACAAGGCGGAATTGGTTCCGGGTTTTCTTGTGGCAGTCAAGAGGCTCTCAATAGGTAGATTTCATGGGATTCAACAATTCGACGCAGAGATAAGAACATTAGGAAGGATTCGGCAAAATAACCTCGTAACTCTCATTGGATACTACGTGGGAGAAGCAGAGATGTTTCTAATTTACAACTATCTATGTGGTGGGAATCTTGAAACCTTCATACACGAAAGACCTGGGAAAAATGTGCAGTGGCCAGTGTACGGGCACGGGTTCAATATTGTTGGGTGGGCCAAGTTGTTGATGGAGGAAGGGCGTTCTTCTGAGCTTTTCTCACCAGAACTGTGGGAATCTGGGCCTAGTGAGAATCTGCTGAGGATGTTGAGGCTTGCGTCGGCCTGCACAGTAGAGTCACTTTCTGTTAGGCCATCAATGAAGCAGGTGAAGAAGAAAGAAGCTCCTGCATCCTGCTGTTTGTTCTCCTTGTTTGGCTGGTTGGCTGATTATTTGCATGATGAAAGAATGAAAAAGGAAGAAGTTGAGAGGGGCAAACTGCAAAGGGGATGCTTTCTACTGGGATTCACGGTGCTCTGTACATAA

Network for GWHGAAZE025479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	3	25	2.30E-05
PF13855.7	LRR_8	76	137	1.40E-06
PF00560.34	LRR_1	200	221	1.3
PF00560.34	LRR_1	513	532	1.7
PF13855.7	LRR_8	559	619	1.80E-06
PF07714.18	PK_Tyr_Ser-Thr	738	828	2.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.446
	SRR3591706	second leaf	5.488
	SRR3591707	mature leaf	3.385
	SRR3591708	Shoot apex	6.089
	SRR3591709	Stem	3.909
	SRR3591710	White floral bud	3.810
	SRR3591711	White flower	2.767
	SRR3591712	Green floral bud	5.060
	SRR3591713	Yellow flower	0.286
SRP173429	SRR8316895	Juvenile bud stage	2.552
	SRR8316896	Juvenile bud stage	2.481
	SRR8316897	Juvenile bud stage	1.610
	SRR8316894	Third green stage	1.772
	SRR8316900	Third green stage	3.950
	SRR8316901	Third green stage	2.436
	SRR8316898	Complete white stage	0.931
	SRR8316899	Complete white stage	3.501
	SRR8316903	Complete white stage	2.238
	SRR8316902	Silver flowering stage	0.414
	SRR8316904	Silver flowering stage	0.950
	SRR8316905	Silver flowering stage	0.387
	SRR8316906	Gold flowering stage	1.021
	SRR8316907	Gold flowering stage	0.680
	SRR8316908	Gold flowering stage	0.936
SRP132670	SRR6706286	Control	2.772
	SRR6706287	Light intensity 50%	2.739
	SRR6706288	Light intensity 20%	3.793
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.337
	CNS0095593	Slightly white alabastrum(diploid) 2	2.979
	CNS0095594	Slightly white alabastrum(diploid) 3	2.882
	CNS0095595	Whole white alabastrum(diploid) 2	2.325
	CNS0095596	Whole white alabastrum(diploid) 3	1.951
	CNS0095597	Whole white alabastrum(diploid) 4	1.773
	CNS0095598	Silvery flower (diploied) 1	5.733
	CNS0095599	Silvery flower (diploied) 2	3.011
	CNS0095600	Silvery flower (diploied) 3	3.470
	CNS0095601	Golden flower (diploid) 1	4.575
	CNS0095602	Golden flower (diploid) 2	3.645
	CNS0095603	Golden flower (diploid) 3	3.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.339
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.427
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.437
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.490
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.576
	CNS0095610	Silvery flower (tetraploid) 1	1.395
	CNS0095611	Silvery flower (tetraploid) 2	2.667
	CNS0095612	Silvery flower (tetraploid) 3	1.788
	CNS0095613	Golden flower (tetraploid) 1	0.422
	CNS0095614	Golden flower (tetraploid) 2	1.240
	CNS0095615	Golden flower (tetraploid) 3	0.500
CRA001975	CRR073297	Stem 1	4.454
	CRR073298	Stem 2	4.316
	CRR073299	Stem 3	4.321
	CRR073300	Leaf 1	3.901
	CRR073301	Leaf 2	3.559
	CRR073302	Leaf 3	2.801
	CRR073303	Juvenile bud 1	2.002
	CRR073304	Juvenile bud 2	1.431
	CRR073305	Juvenile bud 3	3.571
	CRR073306	Third green 1	0.260
	CRR073307	Third green 2	0.053
	CRR073308	Third green 3	0.375
	CRR073309	Second white 1	0.091
	CRR073310	Second white 2	0.090
	CRR073311	Second white 3	0.056
	CRR073312	Silver flowering 1	0.110
	CRR073313	Silver flowering 2	0.036
	CRR073314	Silver flowering 3	0.013
	CRR073315	Gold flowering 1	1.269
	CRR073316	Gold flowering 2	1.835
	CRR073317	Gold flowering 3	2.319
	CRR073318	Tawny withering 1	4.405
	CRR073319	Tawny withering 2	1.454
	CRR073320	Tawny withering 3	3.093