Gene detail

Detail information of GWHGAAZE025451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273468.1	0	PREDICTED: glycerophosphodiester phosphodiesterase GDPD1, chloroplastic [Vitis vinifera]
COG	YP_005441142.1	0.00000002	putative glycerophosphoryl diester phosphodiesterase
Swissprot	tr\|Q9SGA2\|GDPD1_ARATH	0	Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|A5AMY0\|A5AMY0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71478.1}
TAIR10	AT3G02040.1	1E-146	senescence-related gene 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	61355934	61359795	+
GWHAAZE00000007	mRNA	61355934	61359795	+
GWHAAZE00000007	exon	61355934	61356030	+
GWHAAZE00000007	exon	61356121	61356302	+
GWHAAZE00000007	exon	61357889	61357948	+
GWHAAZE00000007	exon	61358650	61358931	+
GWHAAZE00000007	exon	61359051	61359146	+
GWHAAZE00000007	exon	61359244	61359440	+
GWHAAZE00000007	exon	61359573	61359795	+
GWHAAZE00000007	CDS	61355934	61356030	+
GWHAAZE00000007	CDS	61356121	61356302	+
GWHAAZE00000007	CDS	61357889	61357948	+
GWHAAZE00000007	CDS	61358650	61358931	+
GWHAAZE00000007	CDS	61359051	61359146	+
GWHAAZE00000007	CDS	61359244	61359440	+
GWHAAZE00000007	CDS	61359573	61359795	+

Transcript Sequence
>GWHTAAZE025485 ATGGCTCTCAAGGCTGTTCATGTCTCCGACGTACCTAATCTTGATCATGTCCCTGATAATACCTCATTGTCTCTCTACTCCAACCGATTCTCCAAAGAGGTGAATGTTGGTAGAGGAACGTTTAAGATACCGAAATTTGTAGTGATCGGACATAGAGGTTACGGGATGAATATGTTACAGTCGCCGGATCGGAGAATGAAGGCCGTCAAAGAGAATTCTATTCTCTCTTTTAATACTGCCGGAAAGTTCGCCATCGATTTCGTCGAGTTTGATGTTCAGGTGACAAGAGATGACTGCCCTGTCATTTTCCACGACAACTTCATCCTCTCAGAAGAAAACGGCACTGTAATTGAGAAGAGAGTGACAGAGTTGACTCTATCTGAGTTCCTTAGCTATGGCCCTCAAAGGGAAACTGGTGAGGTGGGAAAATCTCTGCTGAGAAAAATGAAAGACGGCAAGATTATAAGCTGGAACGTTGAATCCGATGATTCTTTATGTACTCTTGAAGAAGCTTTTCAAAAAGTCAACCCTTCTATTGGATTCAACATTGAGTTGAAGTTTGATGACGGAGTCATTTATCAAGAAGACCATCTCATTCATGTCCTCCAATCCATCTTGCAGGTGGTGTTTCAACATGCTAAAGAAAGACCTATAATCTTTTCAACCTTCCAACCTGATGCTGCACTTGTTGTCAAGAAACTACAGAGTACCTACCCTGTTTACTTCCTTACAAATGGAGGAACCGAGATTTACTTTGACGTGAGAAGAAACTCCTTGGAGGAAGCAATGAAATTATGCTTAGAGGGTGGTTTGGAAGGGATTGTGTCTGAAGTTAAGGGCATTTTTAGGAACCCTGGTGCTGTAAACAAGATTAAAGAGTCAAAGCTCTCCCTCCTTACGTACGGCAAATTGAATAATGTGTCTGAAGCAGTCTATTTACAACATCTAATGGGTGTGGAAGGAGTAATTGTCGATCTGGTTGAAGAGATCACAGAGGCTGTTTCGGATTTGATAAAGCCAAGCGGGGAAGGTGAAGGAGAGAGAATATTACAAGGGGAGGAGAAAGCAAAGCCCCAATTTTCTCAAAGAGAGTTGTCATTCATGCTGAAGCTAATACCAGAATTGATACAGTTATAA

Network for GWHGAAZE025451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03009.18	GDPD	51	328	1.00E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18696	GDE1	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.445
	SRR3591706	second leaf	55.591
	SRR3591707	mature leaf	28.707
	SRR3591708	Shoot apex	65.432
	SRR3591709	Stem	213.023
	SRR3591710	White floral bud	63.122
	SRR3591711	White flower	101.500
	SRR3591712	Green floral bud	55.793
	SRR3591713	Yellow flower	166.945
SRP173429	SRR8316895	Juvenile bud stage	52.559
	SRR8316896	Juvenile bud stage	72.744
	SRR8316897	Juvenile bud stage	30.188
	SRR8316894	Third green stage	76.592
	SRR8316900	Third green stage	101.100
	SRR8316901	Third green stage	105.378
	SRR8316898	Complete white stage	52.263
	SRR8316899	Complete white stage	50.090
	SRR8316903	Complete white stage	85.687
	SRR8316902	Silver flowering stage	128.155
	SRR8316904	Silver flowering stage	228.719
	SRR8316905	Silver flowering stage	89.047
	SRR8316906	Gold flowering stage	348.386
	SRR8316907	Gold flowering stage	375.124
	SRR8316908	Gold flowering stage	332.008
SRP132670	SRR6706286	Control	31.401
	SRR6706287	Light intensity 50%	37.717
	SRR6706288	Light intensity 20%	29.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	84.025
	CNS0095593	Slightly white alabastrum(diploid) 2	88.335
	CNS0095594	Slightly white alabastrum(diploid) 3	119.807
	CNS0095595	Whole white alabastrum(diploid) 2	63.212
	CNS0095596	Whole white alabastrum(diploid) 3	83.749
	CNS0095597	Whole white alabastrum(diploid) 4	76.765
	CNS0095598	Silvery flower (diploied) 1	79.250
	CNS0095599	Silvery flower (diploied) 2	89.737
	CNS0095600	Silvery flower (diploied) 3	107.968
	CNS0095601	Golden flower (diploid) 1	187.484
	CNS0095602	Golden flower (diploid) 2	167.599
	CNS0095603	Golden flower (diploid) 3	162.477
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.420
	CNS0095610	Silvery flower (tetraploid) 1	84.201
	CNS0095611	Silvery flower (tetraploid) 2	67.833
	CNS0095612	Silvery flower (tetraploid) 3	165.968
	CNS0095613	Golden flower (tetraploid) 1	149.513
	CNS0095614	Golden flower (tetraploid) 2	90.298
	CNS0095615	Golden flower (tetraploid) 3	491.174
CRA001975	CRR073297	Stem 1	53.840
	CRR073298	Stem 2	40.917
	CRR073299	Stem 3	41.600
	CRR073300	Leaf 1	38.488
	CRR073301	Leaf 2	56.807
	CRR073302	Leaf 3	52.677
	CRR073303	Juvenile bud 1	41.010
	CRR073304	Juvenile bud 2	36.257
	CRR073305	Juvenile bud 3	56.849
	CRR073306	Third green 1	266.402
	CRR073307	Third green 2	143.453
	CRR073308	Third green 3	163.271
	CRR073309	Second white 1	350.475
	CRR073310	Second white 2	307.227
	CRR073311	Second white 3	326.468
	CRR073312	Silver flowering 1	283.688
	CRR073313	Silver flowering 2	186.275
	CRR073314	Silver flowering 3	139.715
	CRR073315	Gold flowering 1	6.198
	CRR073316	Gold flowering 2	6.009
	CRR073317	Gold flowering 3	4.509
	CRR073318	Tawny withering 1	8.747
	CRR073319	Tawny withering 2	21.546
	CRR073320	Tawny withering 3	12.335