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Detail information of GWHGAAZE025438
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
AGH32898.1
0
actin [Camellia oleifera]
COG
YP_003266114.1
4E-42
actin/actin family protein
Swissprot
tr|Q9LSD6|ARP2_ARATH
0
Actin-related protein 2
trEMBL
tr|M4QSQ0|M4QSQ0_9ERIC
0
Actin {ECO:0000313|EMBL:AGH32898.1}
TAIR10
AT3G27000.1
7E-178
actin related protein 2
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000007
gene
61213652
61218540
+
GWHAAZE00000007
mRNA
61213652
61218540
+
GWHAAZE00000007
exon
61213652
61213768
+
GWHAAZE00000007
exon
61214135
61214269
+
GWHAAZE00000007
exon
61214397
61214472
+
GWHAAZE00000007
exon
61214945
61214994
+
GWHAAZE00000007
exon
61215299
61215402
+
GWHAAZE00000007
exon
61215516
61215584
+
GWHAAZE00000007
exon
61215666
61215729
+
GWHAAZE00000007
exon
61215875
61215943
+
GWHAAZE00000007
exon
61216093
61216176
+
GWHAAZE00000007
exon
61216297
61216355
+
GWHAAZE00000007
exon
61218141
61218207
+
GWHAAZE00000007
exon
61218334
61218540
+
GWHAAZE00000007
CDS
61213652
61213768
+
GWHAAZE00000007
CDS
61214135
61214269
+
GWHAAZE00000007
CDS
61214397
61214472
+
GWHAAZE00000007
CDS
61214945
61214994
+
GWHAAZE00000007
CDS
61215299
61215402
+
GWHAAZE00000007
CDS
61215516
61215584
+
GWHAAZE00000007
CDS
61215666
61215729
+
GWHAAZE00000007
CDS
61215875
61215943
+
GWHAAZE00000007
CDS
61216093
61216176
+
GWHAAZE00000007
CDS
61216297
61216355
+
GWHAAZE00000007
CDS
61218141
61218207
+
GWHAAZE00000007
CDS
61218334
61218540
+
Transcript Sequence
>GWHTAAZE025472 ATGCAGTATGTCAAGTGTGGTTTTGCCGGAGAGAATTTTCCCACCTCAGTATTCCCTTGTGTGGTGGGGAGGCCGATGCTGCGATACGAAGAATCCCTCATGGAACAAGAGCTGAAGGACATTGTCATCGGAGAGTCTTGTTTAAACTTGCGACATCAACTTGATATTTCTTATCCTGTCAATAATGGCATTGTCCAAAATTGGGACGATATGGGTCATGTGTGGGACCATGCATTTTATAATGAACTTAAGGTAGATCCAACGGAATGTAAAATTTTGCTCACAGACCCACCTTTGAATCCCTCCAAAAATCGTGAAAAAATGGTTGGTTTGCTGACTGGATTGGTAATTGACTCTGGTGATGGTGTCACTCATGTGGTTCCGGTTGTTGATGGCTACTCATTTCCTCATCTTACTAAAAGAATGAATGTAGCTGGACGGCACATAACATCGTACCTTGTTGATTTGCTTTTACGGAGAGGGTATGCAATGAATAGAAGCGCTGATTTTGAGACTGTTAGGGACATTAAAGAGAAGCTCTGCTACATAAGTTATGATTACAAAAGGGAATACCAGTTAGGACTTGAGACCACCATCCTTGTTAAGAATTATACTCTGCCTGATGGAAGGGTTATTAAAGTTGGCACTGAAAGGTTTCAAGCCCCAGAAGCTCTCTTTACTCCTGAACTTATTGATGTTGAAGGAGATGGTATGGCTGACATGGTTTTCCGATGTATACAGGAGATGGATATTGACAATCGAATGATGCTCTACCAACATATAGTGTTGAGTGGAGGGAGTACGATGTATCCTGGACTACCTAGTCGCCTAGAGAAGGAAATTTTAGATCGTTATCTGGAAGTTGTTTTGAAGGGAAATAAAGATGGATTAAAGAAACTAAGGTTGCGGATAGAGGATCCACCGCGAAGAAAACACATGGTGTACCTTGGAGGCGCAGTTCTTGCTGGAATTATGAAGGTACATTTACCCCTTTTCTTTCTGTCTCTCACTAACACTTGTAGGCGTACAATTCTCGTGTTTGTGGGAATGAAGAACATTTGGCACCTAAGGACTGGGAATCATTTGGATGTGTTCTTTTAG
Network for GWHGAAZE025438
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00022.20
Actin
2
110
4.80E-25
PF00022.20
Actin
111
326
1.50E-47
Protein Sequence
>GWHPAAZE025456 MQYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEQELKDIVIGESCLNLRHQLDISYPVNNGIVQNWDDMGHVWDHAFYNELKVDPTECKILLTDPPLNPSKNREKMVGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLLRRGYAMNRSADFETVRDIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKVHLPLFFLSLTNTCRRTILVFVGMKNIWHLRTGNHLDVFF
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K17260
ACTR2, ARP2
Autophagy - yeast
map04138
Tight junction
map04530
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
34.923
SRR3591706
second leaf
10.355
SRR3591707
mature leaf
10.269
SRR3591708
Shoot apex
21.349
SRR3591709
Stem
27.239
SRR3591710
White floral bud
15.851
SRR3591711
White flower
21.671
SRR3591712
Green floral bud
16.244
SRR3591713
Yellow flower
19.288
SRP173429
SRR8316895
Juvenile bud stage
10.961
SRR8316896
Juvenile bud stage
18.607
SRR8316897
Juvenile bud stage
10.160
SRR8316894
Third green stage
6.694
SRR8316900
Third green stage
20.222
SRR8316901
Third green stage
21.587
SRR8316898
Complete white stage
9.847
SRR8316899
Complete white stage
21.076
SRR8316903
Complete white stage
14.867
SRR8316902
Silver flowering stage
13.067
SRR8316904
Silver flowering stage
14.141
SRR8316905
Silver flowering stage
7.157
SRR8316906
Gold flowering stage
25.069
SRR8316907
Gold flowering stage
24.786
SRR8316908
Gold flowering stage
27.801
SRP132670
SRR6706286
Control
8.104
SRR6706287
Light intensity 50%
8.448
SRR6706288
Light intensity 20%
10.237
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
15.596
CNS0095593
Slightly white alabastrum(diploid) 2
15.060
CNS0095594
Slightly white alabastrum(diploid) 3
17.133
CNS0095595
Whole white alabastrum(diploid) 2
13.972
CNS0095596
Whole white alabastrum(diploid) 3
16.311
CNS0095597
Whole white alabastrum(diploid) 4
14.611
CNS0095598
Silvery flower (diploied) 1
15.276
CNS0095599
Silvery flower (diploied) 2
15.430
CNS0095600
Silvery flower (diploied) 3
19.257
CNS0095601
Golden flower (diploid) 1
11.732
CNS0095602
Golden flower (diploid) 2
17.206
CNS0095603
Golden flower (diploid) 3
18.078
CNS0095604
Slightly white alabastrum(tetraploid) 1
16.367
CNS0095605
Slightly white alabastrum(tetraploid) 2
13.573
CNS0095606
Slightly white alabastrum(tetraploid) 3
16.549
CNS0095607
Whole white alabastrum(tetraploid) 1
13.506
CNS0095608
Whole white alabastrum(tetraploid) 2
11.995
CNS0095609
Whole white alabastrum(tetraploid) 3
15.579
CNS0095610
Silvery flower (tetraploid) 1
16.797
CNS0095611
Silvery flower (tetraploid) 2
13.765
CNS0095612
Silvery flower (tetraploid) 3
13.752
CNS0095613
Golden flower (tetraploid) 1
13.300
CNS0095614
Golden flower (tetraploid) 2
18.346
CNS0095615
Golden flower (tetraploid) 3
15.677
CRA001975
CRR073297
Stem 1
8.142
CRR073298
Stem 2
8.256
CRR073299
Stem 3
8.257
CRR073300
Leaf 1
7.379
CRR073301
Leaf 2
8.959
CRR073302
Leaf 3
7.018
CRR073303
Juvenile bud 1
6.460
CRR073304
Juvenile bud 2
7.048
CRR073305
Juvenile bud 3
6.690
CRR073306
Third green 1
6.685
CRR073307
Third green 2
6.388
CRR073308
Third green 3
6.543
CRR073309
Second white 1
7.113
CRR073310
Second white 2
8.342
CRR073311
Second white 3
6.156
CRR073312
Silver flowering 1
9.129
CRR073313
Silver flowering 2
9.572
CRR073314
Silver flowering 3
5.518
CRR073315
Gold flowering 1
5.969
CRR073316
Gold flowering 2
5.538
CRR073317
Gold flowering 3
4.206
CRR073318
Tawny withering 1
13.188
CRR073319
Tawny withering 2
10.723
CRR073320
Tawny withering 3
13.000