Detail information of GWHGAAZE025438


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGH32898.10actin [Camellia oleifera]
COGYP_003266114.14E-42actin/actin family protein
Swissprottr|Q9LSD6|ARP2_ARATH0Actin-related protein 2
trEMBLtr|M4QSQ0|M4QSQ0_9ERIC0Actin {ECO:0000313|EMBL:AGH32898.1}
TAIR10AT3G27000.17E-178actin related protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6121365261218540+
GWHAAZE00000007mRNA6121365261218540+
GWHAAZE00000007exon6121365261213768+
GWHAAZE00000007exon6121413561214269+
GWHAAZE00000007exon6121439761214472+
GWHAAZE00000007exon6121494561214994+
GWHAAZE00000007exon6121529961215402+
GWHAAZE00000007exon6121551661215584+
GWHAAZE00000007exon6121566661215729+
GWHAAZE00000007exon6121587561215943+
GWHAAZE00000007exon6121609361216176+
GWHAAZE00000007exon6121629761216355+
GWHAAZE00000007exon6121814161218207+
GWHAAZE00000007exon6121833461218540+
GWHAAZE00000007CDS6121365261213768+
GWHAAZE00000007CDS6121413561214269+
GWHAAZE00000007CDS6121439761214472+
GWHAAZE00000007CDS6121494561214994+
GWHAAZE00000007CDS6121529961215402+
GWHAAZE00000007CDS6121551661215584+
GWHAAZE00000007CDS6121566661215729+
GWHAAZE00000007CDS6121587561215943+
GWHAAZE00000007CDS6121609361216176+
GWHAAZE00000007CDS6121629761216355+
GWHAAZE00000007CDS6121814161218207+
GWHAAZE00000007CDS6121833461218540+
Transcript Sequence

Network for GWHGAAZE025438

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.20Actin21104.80E-25
PF00022.20Actin1113261.50E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17260ACTR2, ARP2 Autophagy - yeast map04138
Tight junctionmap04530

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.923
SRR3591706second leaf10.355
SRR3591707mature leaf10.269
SRR3591708Shoot apex21.349
SRR3591709Stem27.239
SRR3591710White floral bud15.851
SRR3591711White flower21.671
SRR3591712Green floral bud16.244
SRR3591713Yellow flower19.288
SRP173429 SRR8316895Juvenile bud stage 10.961
SRR8316896Juvenile bud stage 18.607
SRR8316897Juvenile bud stage 10.160
SRR8316894Third green stage 6.694
SRR8316900Third green stage 20.222
SRR8316901Third green stage 21.587
SRR8316898Complete white stage 9.847
SRR8316899Complete white stage 21.076
SRR8316903Complete white stage 14.867
SRR8316902Silver flowering stage13.067
SRR8316904Silver flowering stage14.141
SRR8316905Silver flowering stage7.157
SRR8316906Gold flowering stage 25.069
SRR8316907Gold flowering stage 24.786
SRR8316908Gold flowering stage 27.801
SRP132670SRR6706286Control8.104
SRR6706287Light intensity 50%8.448
SRR6706288Light intensity 20%10.237
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.596
CNS0095593Slightly white alabastrum(diploid) 215.060
CNS0095594Slightly white alabastrum(diploid) 317.133
CNS0095595Whole white alabastrum(diploid) 213.972
CNS0095596Whole white alabastrum(diploid) 316.311
CNS0095597Whole white alabastrum(diploid) 414.611
CNS0095598Silvery flower (diploied) 115.276
CNS0095599Silvery flower (diploied) 215.430
CNS0095600Silvery flower (diploied) 319.257
CNS0095601Golden flower (diploid) 111.732
CNS0095602Golden flower (diploid) 217.206
CNS0095603Golden flower (diploid) 318.078
CNS0095604Slightly white alabastrum(tetraploid) 116.367
CNS0095605Slightly white alabastrum(tetraploid) 213.573
CNS0095606Slightly white alabastrum(tetraploid) 316.549
CNS0095607Whole white alabastrum(tetraploid) 113.506
CNS0095608Whole white alabastrum(tetraploid) 211.995
CNS0095609Whole white alabastrum(tetraploid) 315.579
CNS0095610Silvery flower (tetraploid) 116.797
CNS0095611Silvery flower (tetraploid) 213.765
CNS0095612Silvery flower (tetraploid) 313.752
CNS0095613Golden flower (tetraploid) 113.300
CNS0095614Golden flower (tetraploid) 218.346
CNS0095615Golden flower (tetraploid) 315.677
CRA001975CRR073297Stem 18.142
CRR073298Stem 28.256
CRR073299Stem 38.257
CRR073300Leaf 17.379
CRR073301Leaf 28.959
CRR073302Leaf 37.018
CRR073303Juvenile bud 16.460
CRR073304Juvenile bud 27.048
CRR073305Juvenile bud 36.690
CRR073306Third green 16.685
CRR073307Third green 26.388
CRR073308Third green 36.543
CRR073309Second white 17.113
CRR073310Second white 28.342
CRR073311Second white 36.156
CRR073312Silver flowering 19.129
CRR073313Silver flowering 29.572
CRR073314Silver flowering 35.518
CRR073315Gold flowering 15.969
CRR073316Gold flowering 25.538
CRR073317Gold flowering 34.206
CRR073318Tawny withering 113.188
CRR073319Tawny withering 210.723
CRR073320Tawny withering 313.000