Detail information of GWHGAAZE025377


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004304687.14.27794E-55PREDICTED: 18.1 kDa class I heat shock protein-like [Fragaria vesca subsp. vesca]
COGYP_005887446.11E-20heat shock protein Hsp20
Swissprottr|P27879|HSP11_MEDSA1E-4618.1 kDa class I heat shock protein (Fragment)
trEMBLtr|W9S8M5|W9S8M5_9ROSA2E-51Uncharacterized protein {ECO:0000313|EMBL:EXC31405.1}
TAIR10AT1G53540.11E-26HSP20-like chaperones superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6039468660395117+
GWHAAZE00000007mRNA6039468660395117+
GWHAAZE00000007exon6039468660395117+
GWHAAZE00000007CDS6039468660395117+
Transcript Sequence

Network for GWHGAAZE025377

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20311387.30E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.278
SRR3591706second leaf0.000
SRR3591707mature leaf0.278
SRR3591708Shoot apex1.062
SRR3591709Stem1.369
SRR3591710White floral bud0.844
SRR3591711White flower1.411
SRR3591712Green floral bud0.126
SRR3591713Yellow flower0.256
SRP173429 SRR8316895Juvenile bud stage 1.426
SRR8316896Juvenile bud stage 38.022
SRR8316897Juvenile bud stage 1.680
SRR8316894Third green stage 0.328
SRR8316900Third green stage 0.150
SRR8316901Third green stage 0.082
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.409
SRR8316903Complete white stage 0.236
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.096
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.240
SRR6706287Light intensity 50%0.280
SRR6706288Light intensity 20%0.527
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.796
CNS0095593Slightly white alabastrum(diploid) 20.842
CNS0095594Slightly white alabastrum(diploid) 31.377
CNS0095595Whole white alabastrum(diploid) 20.385
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.168
CNS0095598Silvery flower (diploied) 10.502
CNS0095599Silvery flower (diploied) 242.515
CNS0095600Silvery flower (diploied) 310.331
CNS0095601Golden flower (diploid) 1209.780
CNS0095602Golden flower (diploid) 28.831
CNS0095603Golden flower (diploid) 39.830
CNS0095604Slightly white alabastrum(tetraploid) 11.236
CNS0095605Slightly white alabastrum(tetraploid) 21.047
CNS0095606Slightly white alabastrum(tetraploid) 30.379
CNS0095607Whole white alabastrum(tetraploid) 10.489
CNS0095608Whole white alabastrum(tetraploid) 20.567
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.658
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.295
CNS0095614Golden flower (tetraploid) 20.137
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.224
CRR073298Stem 20.376
CRR073299Stem 30.000
CRR073300Leaf 10.973
CRR073301Leaf 20.071
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.347
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.014
CRR073306Third green 10.000
CRR073307Third green 20.777
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.226
CRR073317Gold flowering 30.251
CRR073318Tawny withering 11.593
CRR073319Tawny withering 21.159
CRR073320Tawny withering 31.301