Gene detail

Detail information of GWHGAAZE025346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010550148.1	3.4853E-151	PREDICTED: putative glucose-6-phosphate 1-epimerase [Tarenaya hassleriana]
COG	YP_002355684.1	8E-46	aldose 1-epimerase
Swissprot	tr\|Q40784\|AAPC_CENCI	7E-116	Putative glucose-6-phosphate 1-epimerase
trEMBL	tr\|B9S660\|B9S660_RICCO	6E-148	Aldose 1-epimerase, putative {ECO:0000313\|EMBL:EEF40969.1}
TAIR10	AT5G14500.1	1E-117	aldose 1-epimerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59994293	59997627	+
GWHAAZE00000007	mRNA	59994293	59997627	+
GWHAAZE00000007	exon	59994293	59994412	+
GWHAAZE00000007	exon	59994497	59994654	+
GWHAAZE00000007	exon	59994773	59994904	+
GWHAAZE00000007	exon	59995485	59995587	+
GWHAAZE00000007	exon	59996319	59996418	+
GWHAAZE00000007	exon	59997410	59997627	+
GWHAAZE00000007	CDS	59994293	59994412	+
GWHAAZE00000007	CDS	59994497	59994654	+
GWHAAZE00000007	CDS	59994773	59994904	+
GWHAAZE00000007	CDS	59995485	59995587	+
GWHAAZE00000007	CDS	59996319	59996418	+
GWHAAZE00000007	CDS	59997410	59997627	+

Transcript Sequence
>GWHTAAZE025380 AGCAACATTGTTGAAGAGTTTCATTTTTTGTACAATAATTATGGGGCTTGCTCTCTTACACAGGCTATATGGAAACAACCTAAAGCCATCAGGGGCGGTATAAGCATTTGCTTCCCACAGTTTGGAAATTTTGGTTCACTAGAGCAGCATGGATTTGCAAGGAACAGAATGTGGTCAGTGGATAATGATCCTTTGCCTTTGCCTCCAGCTAAGAGTCAATCAACAGCAGATCTTATATATAAATCCACAGAAGAGGATCTGAAGACATGGCCACATAGATTTGAGTTGCGGCTTCGTATTTCTCTTGGTGCTGGCAAACTCACTTTGATTCCTCGCGTGAGAAATCTAGATAGCAAGGCCTTCTCGTTTATGTTTGCTCTGAGAAATTACTTATCTGTATCAGATGTCAGTGAAGTGCGCATTGAGGGCTTGGAGACGCTTGACTACTTCGATAATTTGCTGCGGAGAGAAAGGTACACAGAGCAGGCAGATGCAATAACCTTTGATAATGAGATGGACCGAGTGTATCTGTGCACACCTACAAAGATAGCCATTATAGACCATGAAAGGAAGAGAACCCTTGAACTACGCAAAGAAGGCATGCAAGATGCAGGGGTGTGGAATCCTTGGGACAAAAGGGCAAAGGCTATCCTGGATTTGGGAGATGGAGATTATAAGAAAATGTTATGTGTTGATTCGGCTGCCATTGAAACTCCGATTGTATTGAAGCCCTTTGAAGAGTGGAAGGGGCGACAAGAGTTATCTGCTGTTTGCTCAAGCTATCGTAGTGGGCAGTTGGATCCAATGAAGGTTATTGACTGCCTGCGGTAG

Network for GWHGAAZE025346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	20	254	1.50E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01792	E5.1.3.15	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.256
	SRR3591706	second leaf	59.172
	SRR3591707	mature leaf	85.956
	SRR3591708	Shoot apex	65.870
	SRR3591709	Stem	100.700
	SRR3591710	White floral bud	90.971
	SRR3591711	White flower	53.839
	SRR3591712	Green floral bud	74.102
	SRR3591713	Yellow flower	38.489
SRP173429	SRR8316895	Juvenile bud stage	61.123
	SRR8316896	Juvenile bud stage	76.400
	SRR8316897	Juvenile bud stage	39.105
	SRR8316894	Third green stage	25.013
	SRR8316900	Third green stage	67.641
	SRR8316901	Third green stage	70.761
	SRR8316898	Complete white stage	18.923
	SRR8316899	Complete white stage	109.889
	SRR8316903	Complete white stage	31.435
	SRR8316902	Silver flowering stage	19.708
	SRR8316904	Silver flowering stage	20.421
	SRR8316905	Silver flowering stage	8.959
	SRR8316906	Gold flowering stage	30.547
	SRR8316907	Gold flowering stage	27.184
	SRR8316908	Gold flowering stage	43.049
SRP132670	SRR6706286	Control	51.440
	SRR6706287	Light intensity 50%	59.183
	SRR6706288	Light intensity 20%	56.284
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	100.058
	CNS0095593	Slightly white alabastrum(diploid) 2	103.150
	CNS0095594	Slightly white alabastrum(diploid) 3	94.859
	CNS0095595	Whole white alabastrum(diploid) 2	111.153
	CNS0095596	Whole white alabastrum(diploid) 3	96.172
	CNS0095597	Whole white alabastrum(diploid) 4	109.409
	CNS0095598	Silvery flower (diploied) 1	61.073
	CNS0095599	Silvery flower (diploied) 2	74.106
	CNS0095600	Silvery flower (diploied) 3	38.197
	CNS0095601	Golden flower (diploid) 1	70.756
	CNS0095602	Golden flower (diploid) 2	37.959
	CNS0095603	Golden flower (diploid) 3	38.982
	CNS0095604	Slightly white alabastrum(tetraploid) 1	83.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	78.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.196
	CNS0095607	Whole white alabastrum(tetraploid) 1	102.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	102.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.377
	CNS0095610	Silvery flower (tetraploid) 1	58.234
	CNS0095611	Silvery flower (tetraploid) 2	38.513
	CNS0095612	Silvery flower (tetraploid) 3	27.307
	CNS0095613	Golden flower (tetraploid) 1	32.595
	CNS0095614	Golden flower (tetraploid) 2	36.043
	CNS0095615	Golden flower (tetraploid) 3	41.657
CRA001975	CRR073297	Stem 1	43.060
	CRR073298	Stem 2	33.154
	CRR073299	Stem 3	21.140
	CRR073300	Leaf 1	69.839
	CRR073301	Leaf 2	58.762
	CRR073302	Leaf 3	33.825
	CRR073303	Juvenile bud 1	53.502
	CRR073304	Juvenile bud 2	24.405
	CRR073305	Juvenile bud 3	34.706
	CRR073306	Third green 1	25.013
	CRR073307	Third green 2	24.156
	CRR073308	Third green 3	25.773
	CRR073309	Second white 1	8.241
	CRR073310	Second white 2	10.890
	CRR073311	Second white 3	7.225
	CRR073312	Silver flowering 1	6.716
	CRR073313	Silver flowering 2	7.171
	CRR073314	Silver flowering 3	8.395
	CRR073315	Gold flowering 1	29.339
	CRR073316	Gold flowering 2	28.366
	CRR073317	Gold flowering 3	14.933
	CRR073318	Tawny withering 1	34.799
	CRR073319	Tawny withering 2	37.610
	CRR073320	Tawny withering 3	33.543