Gene detail

Detail information of GWHGAAZE025344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02058.1	0	unnamed protein product [Coffea canephora]
COG	YP_007945910.1	2E-17	protein kinase family protein with PASTA domain
Swissprot	tr\|P15792\|KPK1_PHAVU	0	Protein kinase PVPK-1
trEMBL	tr\|A0A068U366\|A0A068U366_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02058.1}
TAIR10	AT5G47750.1	0	D6 protein kinase like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59981054	59983407	+
GWHAAZE00000007	mRNA	59981054	59983407	+
GWHAAZE00000007	exon	59981054	59982024	+
GWHAAZE00000007	exon	59982588	59983407	+
GWHAAZE00000007	CDS	59981054	59982024	+
GWHAAZE00000007	CDS	59982588	59983407	+

Transcript Sequence
>GWHTAAZE025378 ATGGAATCACTTGTTGATGGAGTTAGTTCTTTATCTCCATTAGGCTACAACCCTTCCTCTTCAAGGACTAGCCAACCACCAAATCCTCTATCTTCCAAAGCTTCGATGAGTAGTAGTTCAAAGAATTCCTACAAAACTGAATCATCATCAAAGCGCCACTTGGAATCAAACAAGGGTAAATCGGAATTTGTACACCCAAGTGAATTTCTTGATCAAACGGCCGATGATTCTTCTTTAAACAACATTTCGACATTTCAAAACAAATCTCCCATTGATAATTCGGATTATTCCGGTTCTAGTAGCTTGTTGGAATCCATGGACTTCGGTTCTGACCACCCGGCTAAAGGAGCCGTTGGGGTTTCAAGTCCTCAAAATAGTTTCTACTCAACCGCACAGTTCACTGCACACAAAGAAAGCTTCACCAACACCGAGGTAAGCGAAGAAAAATCTTTGGAAAGCGGTGAAGTTAGCAATTCTTGTGATTATGTAGAAAGTAGAAAGACCAGTATTTACAGAGGTAGTACCGGCAGTGATGTCAGCGATGAGAGTAGCTCGAGTAGCTTTAGTAGTGCTGTATATAAACCCCACAAGGCGAATGATTCGAGATGGGAAGCGATCCAAGCCATTAGATCTCGAGATGGATCATTGGGATTGAACCAATTTAGGCTTTTGAAGCAATTGGGGTGTGGAGATATAGGTAAGGTTTATCTGTCCGAGTTGACCGGGACGAGAAGTTATTTTGCTATGAAAGTGATGGATAAAGTGGCTCTAGCAAGCCGGAAGAAGCTTTTGAGGGCACAGACTGAAAGAGAGATATTGCAGTCGCTTGATCATCCATTTTTACCTACTTTGTATTCGCACTTTGAGACTGAGAAGTTTTCTTGCTTGGTGATGGAGTTTTGTAATGGGGGAGATTTGCACGCGCTTAGGCAAAAGCAACCCGGAAAATATTTTCCAGAGCATGCTGCCAGGTTTTATGTGGCCGAAGTTCTGCTTGCATTAGAGTATTTGCACATGCTTGGGATCATTTACAGAGACCTAAAACCCGAGAACGTGCTAGTGAGAGAAGATGGTCACATAATGCTTTCCGATTTCGACCTCTCGCTACGATGCACTGTGAGCCCCACCCTTGTCCGGTCCTCGAATACCGGTTTAGAATCCAAGAACACGGGCTACTGCATGCAGCCTGCTTGTATTGAACCGTCTTGTGTAATCCAGCCGGCTTGCATCCAACCCACATGTTTTGGACCTCGCTTTTTTCGAAACTCCAAAAAAGACAAGAAACCCAAGCCAAAAACGGAACCATATAACCATGTGAGCCCTCTGCCGGAACTCATGGCAGAGCCCACAAGTGCTCGATCAATGTCCTTCGTTGGTACCCATGAGTATTTGGCACCCGAGATTATTAAAGGTGAAGGCCATGGTAGTGCAGTGGACTGGTGGACTTTTGGGATTTTTCTTTATGAGCTCTTGTTTGGGAAAACGCCTTTCAAAGGGGCTGGGAACCGGGCCACCTTGTTTAATGTGGTGGGTCAGCCTTTAAGGTTCCCAGAGACACCTAGTGTGAGCTTTGCCGCTAGGGATTTGATCAGAGGGTTGCTGGTGAAAGAGCCGCAGCACAGGCTTGCTTATAGACGGGGTGCCACTGAGGTGAAACAGCACCCTTTTTTCCAGAGTGTGAATTGGGCACTTATACGGTGTGCCAGCCCACCGGACGTGCCGAAACCAGTCCCCGTGAATGAGGTGGCGCAGAAGGGGCCCGTAGAGAAGACGGGGCCGGTGTCGATGTAA

Network for GWHGAAZE025344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	222	374	5.10E-37
PF00069.26	Pkinase	454	557	1.40E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.700
	SRR3591706	second leaf	10.139
	SRR3591707	mature leaf	8.046
	SRR3591708	Shoot apex	13.390
	SRR3591709	Stem	14.689
	SRR3591710	White floral bud	30.630
	SRR3591711	White flower	16.856
	SRR3591712	Green floral bud	23.175
	SRR3591713	Yellow flower	5.569
SRP173429	SRR8316895	Juvenile bud stage	6.071
	SRR8316896	Juvenile bud stage	6.880
	SRR8316897	Juvenile bud stage	3.593
	SRR8316894	Third green stage	4.020
	SRR8316900	Third green stage	13.726
	SRR8316901	Third green stage	13.912
	SRR8316898	Complete white stage	14.337
	SRR8316899	Complete white stage	22.129
	SRR8316903	Complete white stage	23.038
	SRR8316902	Silver flowering stage	4.050
	SRR8316904	Silver flowering stage	5.522
	SRR8316905	Silver flowering stage	3.401
	SRR8316906	Gold flowering stage	7.109
	SRR8316907	Gold flowering stage	6.019
	SRR8316908	Gold flowering stage	8.448
SRP132670	SRR6706286	Control	11.707
	SRR6706287	Light intensity 50%	13.109
	SRR6706288	Light intensity 20%	13.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.598
	CNS0095593	Slightly white alabastrum(diploid) 2	5.723
	CNS0095594	Slightly white alabastrum(diploid) 3	4.651
	CNS0095595	Whole white alabastrum(diploid) 2	6.424
	CNS0095596	Whole white alabastrum(diploid) 3	5.850
	CNS0095597	Whole white alabastrum(diploid) 4	4.730
	CNS0095598	Silvery flower (diploied) 1	5.373
	CNS0095599	Silvery flower (diploied) 2	5.228
	CNS0095600	Silvery flower (diploied) 3	9.409
	CNS0095601	Golden flower (diploid) 1	4.103
	CNS0095602	Golden flower (diploid) 2	6.375
	CNS0095603	Golden flower (diploid) 3	5.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.219
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.278
	CNS0095610	Silvery flower (tetraploid) 1	11.215
	CNS0095611	Silvery flower (tetraploid) 2	9.192
	CNS0095612	Silvery flower (tetraploid) 3	35.266
	CNS0095613	Golden flower (tetraploid) 1	4.028
	CNS0095614	Golden flower (tetraploid) 2	8.150
	CNS0095615	Golden flower (tetraploid) 3	6.076
CRA001975	CRR073297	Stem 1	14.348
	CRR073298	Stem 2	16.778
	CRR073299	Stem 3	15.710
	CRR073300	Leaf 1	20.090
	CRR073301	Leaf 2	16.636
	CRR073302	Leaf 3	17.918
	CRR073303	Juvenile bud 1	19.490
	CRR073304	Juvenile bud 2	34.511
	CRR073305	Juvenile bud 3	25.695
	CRR073306	Third green 1	41.344
	CRR073307	Third green 2	28.628
	CRR073308	Third green 3	36.916
	CRR073309	Second white 1	46.815
	CRR073310	Second white 2	37.063
	CRR073311	Second white 3	30.000
	CRR073312	Silver flowering 1	13.142
	CRR073313	Silver flowering 2	13.335
	CRR073314	Silver flowering 3	10.334
	CRR073315	Gold flowering 1	2.858
	CRR073316	Gold flowering 2	2.553
	CRR073317	Gold flowering 3	5.666
	CRR073318	Tawny withering 1	7.374
	CRR073319	Tawny withering 2	1.922
	CRR073320	Tawny withering 3	8.467