Gene detail

Detail information of GWHGAAZE025340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42864.1	0	hypothetical protein JCGZ_23806 [Jatropha curcas]
COG	YP_643511.1	7E-29	serine/threonine protein kinase
Swissprot	tr\|O80396\|M2K3_ARATH	0	Mitogen-activated protein kinase kinase 3
trEMBL	tr\|A0A067LFI6\|A0A067LFI6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42864.1}
TAIR10	AT5G40440.1	0	mitogen-activated protein kinase kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59897158	59901580	+
GWHAAZE00000007	mRNA	59897158	59901580	+
GWHAAZE00000007	exon	59897158	59897259	+
GWHAAZE00000007	exon	59897337	59897591	+
GWHAAZE00000007	exon	59898214	59898432	+
GWHAAZE00000007	exon	59898527	59898664	+
GWHAAZE00000007	exon	59898834	59899001	+
GWHAAZE00000007	exon	59899185	59899298	+
GWHAAZE00000007	exon	59899888	59899995	+
GWHAAZE00000007	exon	59900160	59900251	+
GWHAAZE00000007	exon	59901179	59901580	+
GWHAAZE00000007	CDS	59897158	59897259	+
GWHAAZE00000007	CDS	59897337	59897591	+
GWHAAZE00000007	CDS	59898214	59898432	+
GWHAAZE00000007	CDS	59898527	59898664	+
GWHAAZE00000007	CDS	59898834	59899001	+
GWHAAZE00000007	CDS	59899185	59899298	+
GWHAAZE00000007	CDS	59899888	59899995	+
GWHAAZE00000007	CDS	59900160	59900251	+
GWHAAZE00000007	CDS	59901179	59901539	+
GWHAAZE00000007	three_prime_UTR	59901540	59901580	+

Transcript Sequence
>GWHTAAZE025374 ATGGCTGGGCTGGAGGAATTGAAAAAGAAGCTTGCGCCATTGTTTGATGCCGAAAAGGGCTTCTCATCTGGGTCAACTTTGGACCCTTCTGATTCTTATATGGTATCGGACGGTGGTACTGTTAACTTATTGAGTCGGTCCTATGGAGTATACAACATTAATGAGCTTGGATTACAAAAGTGCACTTCAAGGCCAGAGGATGATACGGACCAGAGTGAAAGGACGTATAGGTGCGCTTCCCAAGAGATGAGGATTTTCGGAGCCATTGGTAGTGGTGCAAGCAGTGTTGTTCAGAGAGCTATTCATATACCCACTCATAGAATTATTGCCTTGAAGAAGATTAATATTTTTGAAAAGGAGAAAAGGCAGCAGCTTCTTACTGAGATAAGAACATTGTGTGAAGCACCTTGTTATCAAGGTCTCGTTGAATTCTATGGAGCGTTCTATACTCCCGACTCTGGGCAAATAAGCATAGCTTTAGAGTACATGGATGGAGGGTCCGTAGCAGATATCATACGCGTGAGGAAATGTATACCGGAAGCAGTACTTTCATTTATGGTTCAAAAGCTCTTGCATGGACTAAGTTACTTGCATGGAGTTAGACACTTAGTTCACAGGGACATAAAGCCGGCAAATTTGCTTGTAAATCTCAAGGGAGAGCCAAAGATAACAGACTTTGGAATAAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACAGTTACATACATGTCGCCTGAGCGCATTCGAAATGAGAGTTATTCATATCCAGCTGATATTTGGAGCCTAGGGATTGCACTTTTTGAGTGTGGTACAGGAGAATTTCCATATACAGCTAATGAGGGACCAGTCAACCTTATGTTGCAGATATTGGATGATCCATCTCCTTCACCCCCAAAGAACATATTTTCTCCAGAGTTTTGCTCATTTATTGATGATTGCCTGCAAAAAGATGCAGATGCAAGGCCAACAGCAGAGCAGCTTCTTTCACACCCATTTATTACGAGATATGAGGATGCGGGGGTGGATTTAGCAGCATTTGTTCGTAGCATTTTCGATCCAACCCAAAGGATGAAGGATTTGGCAGATATGCTGACAATTCACTATTATCTACTCTTCAACGGACCTGATGAACTTTGGCAACATGCAAAGACCTTATATAACGACGGTTCAATTTTCAGCTTCTCCGGGAAAGAACATGTGGGCCCAAATAATATCTTTACGAATTTGTCAAGCATTCGAAGTACATTAGCAGGGGAATGGCCTCCCGAAAAGCTCGTGCACGTTGTGGAAAAACTTCAATGTCGTGCTAATGGTCAAGATGGAGTTGCGATCCGTGTATCAGGTTCTTTTATAGTTGGAAATCAGTTCTTAATATGTGGAGACGGTATACAAGTAGAGGGCGTTCCTGATTTTAAAGATCTTTCTATTGATATACCTAGCAAGCGAATGGGAACATTTCAAGAGCAGTTTATTATGGAAGCTGGTAACGTTATTGGCCATTACTTCATAGCTAAACAAGAGCTTTATATCACCCAGTAGAGAATGTGAGAGTAAGTGTCATCTCTTTTAATATAAATTGA

Network for GWHGAAZE025340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	87	339	7.10E-60

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K20607	MKK3	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.987
	SRR3591706	second leaf	12.981
	SRR3591707	mature leaf	18.256
	SRR3591708	Shoot apex	22.826
	SRR3591709	Stem	45.845
	SRR3591710	White floral bud	33.513
	SRR3591711	White flower	44.736
	SRR3591712	Green floral bud	33.299
	SRR3591713	Yellow flower	50.064
SRP173429	SRR8316895	Juvenile bud stage	17.469
	SRR8316896	Juvenile bud stage	26.411
	SRR8316897	Juvenile bud stage	13.029
	SRR8316894	Third green stage	10.303
	SRR8316900	Third green stage	27.926
	SRR8316901	Third green stage	29.614
	SRR8316898	Complete white stage	14.073
	SRR8316899	Complete white stage	47.952
	SRR8316903	Complete white stage	24.310
	SRR8316902	Silver flowering stage	18.934
	SRR8316904	Silver flowering stage	28.250
	SRR8316905	Silver flowering stage	13.770
	SRR8316906	Gold flowering stage	60.925
	SRR8316907	Gold flowering stage	56.886
	SRR8316908	Gold flowering stage	55.608
SRP132670	SRR6706286	Control	22.596
	SRR6706287	Light intensity 50%	24.026
	SRR6706288	Light intensity 20%	24.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.026
	CNS0095593	Slightly white alabastrum(diploid) 2	22.396
	CNS0095594	Slightly white alabastrum(diploid) 3	18.318
	CNS0095595	Whole white alabastrum(diploid) 2	21.918
	CNS0095596	Whole white alabastrum(diploid) 3	20.071
	CNS0095597	Whole white alabastrum(diploid) 4	20.645
	CNS0095598	Silvery flower (diploied) 1	31.090
	CNS0095599	Silvery flower (diploied) 2	28.402
	CNS0095600	Silvery flower (diploied) 3	44.516
	CNS0095601	Golden flower (diploid) 1	28.256
	CNS0095602	Golden flower (diploid) 2	45.913
	CNS0095603	Golden flower (diploid) 3	44.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.334
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.446
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.549
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.580
	CNS0095610	Silvery flower (tetraploid) 1	41.273
	CNS0095611	Silvery flower (tetraploid) 2	39.242
	CNS0095612	Silvery flower (tetraploid) 3	41.861
	CNS0095613	Golden flower (tetraploid) 1	32.308
	CNS0095614	Golden flower (tetraploid) 2	41.085
	CNS0095615	Golden flower (tetraploid) 3	52.172
CRA001975	CRR073297	Stem 1	14.057
	CRR073298	Stem 2	15.214
	CRR073299	Stem 3	9.388
	CRR073300	Leaf 1	18.090
	CRR073301	Leaf 2	12.493
	CRR073302	Leaf 3	14.997
	CRR073303	Juvenile bud 1	13.784
	CRR073304	Juvenile bud 2	12.834
	CRR073305	Juvenile bud 3	12.242
	CRR073306	Third green 1	7.574
	CRR073307	Third green 2	5.727
	CRR073308	Third green 3	6.018
	CRR073309	Second white 1	16.873
	CRR073310	Second white 2	19.644
	CRR073311	Second white 3	17.738
	CRR073312	Silver flowering 1	12.748
	CRR073313	Silver flowering 2	7.135
	CRR073314	Silver flowering 3	10.236
	CRR073315	Gold flowering 1	8.155
	CRR073316	Gold flowering 2	14.220
	CRR073317	Gold flowering 3	7.117
	CRR073318	Tawny withering 1	13.759
	CRR073319	Tawny withering 2	11.790
	CRR073320	Tawny withering 3	15.460