Detail information of GWHGAAZE025329


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277339.10PREDICTED: serine/threonine-protein kinase Nek6-like [Vitis vinifera]
COGYP_006527485.12E-28serine/threonine protein kinase with PASTA sensor(s)
Swissprottr|Q9LT35|NEK6_ARATH3E-165Serine/threonine-protein kinase Nek6
trEMBLtr|A5CAJ8|A5CAJ8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN81991.1}
TAIR10AT3G20860.12E-138NIMA-related kinase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5971547259721522-
GWHAAZE00000007mRNA5971547259721522-
GWHAAZE00000007exon5971547259716569-
GWHAAZE00000007exon5971665559716706-
GWHAAZE00000007exon5971720459717277-
GWHAAZE00000007exon5971748859717537-
GWHAAZE00000007exon5971762759717708-
GWHAAZE00000007exon5971822059718312-
GWHAAZE00000007exon5971841259718492-
GWHAAZE00000007exon5971857859718623-
GWHAAZE00000007exon5971949659719542-
GWHAAZE00000007exon5971968659719751-
GWHAAZE00000007exon5972049559720561-
GWHAAZE00000007exon5972140459721522-
GWHAAZE00000007CDS5972140459721522-
GWHAAZE00000007CDS5972049559720561-
GWHAAZE00000007CDS5971968659719751-
GWHAAZE00000007CDS5971949659719542-
GWHAAZE00000007CDS5971857859718623-
GWHAAZE00000007CDS5971841259718492-
GWHAAZE00000007CDS5971822059718312-
GWHAAZE00000007CDS5971762759717708-
GWHAAZE00000007CDS5971748859717537-
GWHAAZE00000007CDS5971720459717277-
GWHAAZE00000007CDS5971665559716706-
GWHAAZE00000007CDS5971547259716569-
Transcript Sequence

Network for GWHGAAZE025329

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase152681.10E-66
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyNEK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.539
SRR3591706second leaf35.799
SRR3591707mature leaf23.766
SRR3591708Shoot apex33.150
SRR3591709Stem277.950
SRR3591710White floral bud23.942
SRR3591711White flower23.837
SRR3591712Green floral bud19.995
SRR3591713Yellow flower29.158
SRP173429 SRR8316895Juvenile bud stage 16.652
SRR8316896Juvenile bud stage 16.383
SRR8316897Juvenile bud stage 8.789
SRR8316894Third green stage 8.661
SRR8316900Third green stage 20.130
SRR8316901Third green stage 16.433
SRR8316898Complete white stage 5.885
SRR8316899Complete white stage 25.535
SRR8316903Complete white stage 9.865
SRR8316902Silver flowering stage2.716
SRR8316904Silver flowering stage5.040
SRR8316905Silver flowering stage2.514
SRR8316906Gold flowering stage 10.367
SRR8316907Gold flowering stage 7.181
SRR8316908Gold flowering stage 11.933
SRP132670SRR6706286Control17.471
SRR6706287Light intensity 50%16.187
SRR6706288Light intensity 20%15.529
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.614
CNS0095593Slightly white alabastrum(diploid) 212.962
CNS0095594Slightly white alabastrum(diploid) 310.865
CNS0095595Whole white alabastrum(diploid) 211.136
CNS0095596Whole white alabastrum(diploid) 38.934
CNS0095597Whole white alabastrum(diploid) 49.305
CNS0095598Silvery flower (diploied) 119.202
CNS0095599Silvery flower (diploied) 214.900
CNS0095600Silvery flower (diploied) 38.846
CNS0095601Golden flower (diploid) 117.729
CNS0095602Golden flower (diploid) 213.671
CNS0095603Golden flower (diploid) 313.060
CNS0095604Slightly white alabastrum(tetraploid) 111.655
CNS0095605Slightly white alabastrum(tetraploid) 28.893
CNS0095606Slightly white alabastrum(tetraploid) 326.557
CNS0095607Whole white alabastrum(tetraploid) 19.419
CNS0095608Whole white alabastrum(tetraploid) 24.749
CNS0095609Whole white alabastrum(tetraploid) 39.362
CNS0095610Silvery flower (tetraploid) 19.868
CNS0095611Silvery flower (tetraploid) 210.936
CNS0095612Silvery flower (tetraploid) 313.615
CNS0095613Golden flower (tetraploid) 16.544
CNS0095614Golden flower (tetraploid) 213.626
CNS0095615Golden flower (tetraploid) 35.117
CRA001975CRR073297Stem 126.964
CRR073298Stem 222.297
CRR073299Stem 320.656
CRR073300Leaf 122.358
CRR073301Leaf 221.128
CRR073302Leaf 315.040
CRR073303Juvenile bud 111.967
CRR073304Juvenile bud 28.196
CRR073305Juvenile bud 313.345
CRR073306Third green 17.200
CRR073307Third green 210.525
CRR073308Third green 312.801
CRR073309Second white 16.292
CRR073310Second white 29.121
CRR073311Second white 39.198
CRR073312Silver flowering 110.664
CRR073313Silver flowering 211.575
CRR073314Silver flowering 39.504
CRR073315Gold flowering 115.636
CRR073316Gold flowering 220.722
CRR073317Gold flowering 310.706
CRR073318Tawny withering 189.248
CRR073319Tawny withering 275.072
CRR073320Tawny withering 3114.231