Gene detail

Detail information of GWHGAAZE025316

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG16462.1	0	DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
COG	YP_004671991.1	1E-92	ATP-dependent RNA helicase DBP2
Swissprot	tr\|P46942\|DB10_NICSY	0	ATP-dependent RNA helicase-like protein DB10
trEMBL	tr\|D7M6L2\|D7M6L2_ARALL	0	ATP binding protein {ECO:0000313\|EMBL:EFH47883.1}
TAIR10	AT5G14610.1	0	DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59503949	59514399	+
GWHAAZE00000007	mRNA	59503949	59514399	+
GWHAAZE00000007	exon	59503949	59504290	+
GWHAAZE00000007	exon	59504996	59505151	+
GWHAAZE00000007	exon	59506550	59506618	+
GWHAAZE00000007	exon	59507071	59507526	+
GWHAAZE00000007	exon	59508305	59508655	+
GWHAAZE00000007	exon	59510482	59510759	+
GWHAAZE00000007	exon	59512909	59513271	+
GWHAAZE00000007	exon	59513961	59514399	+
GWHAAZE00000007	CDS	59503949	59504290	+
GWHAAZE00000007	CDS	59504996	59505151	+
GWHAAZE00000007	CDS	59506550	59506618	+
GWHAAZE00000007	CDS	59507071	59507526	+
GWHAAZE00000007	CDS	59508305	59508655	+
GWHAAZE00000007	CDS	59510482	59510759	+
GWHAAZE00000007	CDS	59512909	59513271	+
GWHAAZE00000007	CDS	59513961	59514399	+

Transcript Sequence
>GWHTAAZE025350 ATGGTGGCCACTGCAACCGACTCTTCTGCTGGTCCACGTTATGCACCAGAGGATCCTACTCTTCCCAAACCATGGAAAGGCCTGGTTGATGGTAAGACTGGATATCTTTACTATTGGAATCCAGATACCAATGTGACCCAGTATGAGAGGCCTAAAGCCTCCTTGAATGCTGGTTCAGCTTCATCACGCAAATCGCCCTCTGTCTCTATAAGTTCGTCAGTTCAAGTTCAGCAATCTTCACAAACTCAACGTCGTGATAATAGTTCTATTGATGATGACGATAGATATACCAGAGGTAGCAATGGTGGGTCAAAGCTTGCTGTTGGAACAAGAGGTTACCAGAGTGGCAGGGCTGGATCAGATCGTTTGCACAATGTTACAAATGGTGCAGTCCATGCTGGGCAGGGAGGATCTTCTGCCAGAGGTTATGGGTCATCAGGTGCAGAAAGTGGTTTATCTGCTGAATCTTATCGTCGCCGGCATGAAATAACTGTATCTGGAGACGACGTGCCCCAGCCTTTCACATCATTTGAAGCTACTGGTCTTCCTTCTGAGATTCTTAGAGAGAAGAAGAGGCCTCCTCCTGCTCTAGCTTGCAATCAGCAAGCATTGGCCGCTGCCAGCACATGGAGGATGATGCTTCTTCTTGCTTGCATTTGCCACTCGCACAAGCCCCAAAAGAAACCAACCAATCAGAATCTTGAAAGCCGGTACCTCTGCTTACAAGGGGTTGCTGGTTTTTGCTTTTTCCAGGTACACAATGCTGGGTTCTCTGCCCCTACTCCAATACAGGCACAATCGTGGCCGATTGCTCTTCAAGGTCGTGATATTGTAGCCATTGCGAAGACTGGTTCGGGGAAAACCTTGGGTTATCTGATTCCTAGCTTTTTGCATCTCAAAAAAAGGCATAACAATCCTCGATTGGGTCCAACTGTTTTGGTGTTGTCACCAACGAGAGAGTTGGCAACACAGATACAAGAGGAAGCGGTGAAGTTTGGGAAGTCATCAAGATTATCTTCCACGTGTTTGTATGGAGGAGCACCGAAGGGTCCTCAATTGAGAGATTTAGACAGAGGTACAGATATTGTGGTCGCAACTCCTGGTCGTTTGAATGATATTTTGGAGATGAGAAGAGTCAGCCTCAGTCAAATTTCATACTTGGTTTTAGACGAGGCGGACCGTATGCTAGATATGGGGTTTGAACCTCAAATAAGGAAGATTGTGAAGGAGGTGCCTGCTCGCCGCCAGACCCTCATGTACACTGCAACATGGCCCAAGGAGGTACGCAAAATTGCTGCCGATCTGTTGGTTAATCCAGTTCAGGTTAACATTGGAAATGTTGATGAGCTTGTGGCAAACAAGGCCATCACCCAGCATGTTGAGGTTTTGTCGTTCATGGAAAAACAAAGAAGGCTGGAGCAGATATTGCGATCTCAAGAACCAGGATCTAAAATTATTATTTTCTGTTCAACCAAGAAGATGTGTGATCAGCTTTCACGTAGTCTAACTCGTCAATTTGGAGCTGCAGCAATTCATGGGGACAAATCTCAGAGTGAGAGAGATTATGTTTTGAATCAGTTTCGTTCTGGTAGGTCTCCTGTGCTTGTTGCTACAGATGTTGCAGCTCGTGGACTGGACATTAAAGATATCAGGATCGTTGTCAACTTTGACTTCCCCACAGGAGTTGAGGACTACGTGCACAGGATTGGAAGGACGGGTAGGGCAGGTGCCACAGGTCTGGCGTATACATTTTTCTCAGAACAGGATGCAAAGTATGCTAAAGACCTCATCAAAGTTTTGGAAGGAGCAAATCAGAAGGTCCCAGTTGAGATTCGCGATATGGCTTCACGTGGTGGTGGGATGGGCAAGGCTAGATCTCGGTGGGGCTCTGCTGGTGGACGTGATGGTGGACGGTATGATTCTGGCGGAAAGGATGGAGGAAGGGGTGGTTTTGGGATTCCACCTTCCAGTGGAAGAGGCAGCGGCCGCTTTCCTGAAAGTGAATCACGTGACAGGTATAGTCGCAATGTTGATGCTCCTGTTAGCTATCATAGTTCTAGGAGCTTCCCTGAAAACATGGTACGGGCACCAGAGAAGCACAGCCGGAGTAGAAGCCCCAATCGAAGGGTTGACTACCGGACCAAGGTTCGTAGCCGTAGCCGTAGTGCTGACAGGTACCCACTGCTGCGGTCACGCAGCCCGGTGCACATCTATCGCAAAGTCGTGGCTGACAAGGCTCGATCACCCCCAACCCGACCTTACAATGGTCACAATTCAAGGGAGTTTGAGGGACCCATTGATCCACTGAGCCGCCCTCGGGAGAGGTCGCGGTCCCCACCCAACGGTGTGGGTCTGCAAGAGAGGGGAAGATCTAAAGGCTTTGCTAATGGACCTCGTTCATTTCCTACCGCTGAGGAAGAAGAGGAAGAAGGCTTGATTCCAGCTGATGATTAA

Network for GWHGAAZE025316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	261	431	8.70E-49
PF00271.32	Helicase_C	468	576	3.20E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.070
	SRR3591706	second leaf	29.431
	SRR3591707	mature leaf	35.614
	SRR3591708	Shoot apex	41.040
	SRR3591709	Stem	40.215
	SRR3591710	White floral bud	59.054
	SRR3591711	White flower	57.382
	SRR3591712	Green floral bud	49.672
	SRR3591713	Yellow flower	52.348
SRP173429	SRR8316895	Juvenile bud stage	23.488
	SRR8316896	Juvenile bud stage	31.359
	SRR8316897	Juvenile bud stage	14.812
	SRR8316894	Third green stage	13.956
	SRR8316900	Third green stage	31.064
	SRR8316901	Third green stage	37.480
	SRR8316898	Complete white stage	21.306
	SRR8316899	Complete white stage	63.398
	SRR8316903	Complete white stage	39.129
	SRR8316902	Silver flowering stage	22.758
	SRR8316904	Silver flowering stage	24.464
	SRR8316905	Silver flowering stage	11.580
	SRR8316906	Gold flowering stage	42.240
	SRR8316907	Gold flowering stage	40.015
	SRR8316908	Gold flowering stage	42.511
SRP132670	SRR6706286	Control	38.197
	SRR6706287	Light intensity 50%	42.899
	SRR6706288	Light intensity 20%	45.617
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.017
	CNS0095593	Slightly white alabastrum(diploid) 2	32.975
	CNS0095594	Slightly white alabastrum(diploid) 3	27.553
	CNS0095595	Whole white alabastrum(diploid) 2	27.867
	CNS0095596	Whole white alabastrum(diploid) 3	24.111
	CNS0095597	Whole white alabastrum(diploid) 4	26.402
	CNS0095598	Silvery flower (diploied) 1	27.308
	CNS0095599	Silvery flower (diploied) 2	23.882
	CNS0095600	Silvery flower (diploied) 3	35.307
	CNS0095601	Golden flower (diploid) 1	27.090
	CNS0095602	Golden flower (diploid) 2	42.966
	CNS0095603	Golden flower (diploid) 3	42.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.208
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.178
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.343
	CNS0095610	Silvery flower (tetraploid) 1	38.048
	CNS0095611	Silvery flower (tetraploid) 2	38.396
	CNS0095612	Silvery flower (tetraploid) 3	49.328
	CNS0095613	Golden flower (tetraploid) 1	28.789
	CNS0095614	Golden flower (tetraploid) 2	41.789
	CNS0095615	Golden flower (tetraploid) 3	51.366
CRA001975	CRR073297	Stem 1	59.959
	CRR073298	Stem 2	54.763
	CRR073299	Stem 3	50.184
	CRR073300	Leaf 1	59.532
	CRR073301	Leaf 2	57.621
	CRR073302	Leaf 3	42.068
	CRR073303	Juvenile bud 1	39.784
	CRR073304	Juvenile bud 2	33.815
	CRR073305	Juvenile bud 3	50.245
	CRR073306	Third green 1	29.263
	CRR073307	Third green 2	25.464
	CRR073308	Third green 3	27.921
	CRR073309	Second white 1	28.233
	CRR073310	Second white 2	32.140
	CRR073311	Second white 3	25.953
	CRR073312	Silver flowering 1	29.385
	CRR073313	Silver flowering 2	36.782
	CRR073314	Silver flowering 3	36.927
	CRR073315	Gold flowering 1	36.826
	CRR073316	Gold flowering 2	53.691
	CRR073317	Gold flowering 3	42.277
	CRR073318	Tawny withering 1	49.138
	CRR073319	Tawny withering 2	42.153
	CRR073320	Tawny withering 3	41.758