Detail information of GWHGAAZE025309


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004304633.15.34877E-76PREDICTED: ADP-ribosylation factor 1-like isoform 1 [Fragaria vesca subsp. vesca]
COGYP_001737337.13E-15small GTP-binding protein
Swissprottr|P36397|ARF1_ARATH2E-77ADP-ribosylation factor 1
trEMBLtr|A0A068UXE2|A0A068UXE2_COFCA4E-76Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313|EMBL:CDP13175.1}
TAIR10AT1G10630.12E-61ADP-ribosylation factor A1F

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5937913859379927-
GWHAAZE00000007mRNA5937913859379927-
GWHAAZE00000007exon5937980559379927-
GWHAAZE00000007exon5937957759379695-
GWHAAZE00000007exon5937913859379231-
GWHAAZE00000007CDS5937980559379927-
GWHAAZE00000007CDS5937957759379695-
GWHAAZE00000007CDS5937913859379231-
Transcript Sequence

Network for GWHGAAZE025309

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.22Arf11051.70E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1_2 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf531.850
SRR3591706second leaf214.852
SRR3591707mature leaf291.520
SRR3591708Shoot apex330.542
SRR3591709Stem573.481
SRR3591710White floral bud526.720
SRR3591711White flower461.054
SRR3591712Green floral bud499.193
SRR3591713Yellow flower529.623
SRP173429 SRR8316895Juvenile bud stage 197.713
SRR8316896Juvenile bud stage 280.682
SRR8316897Juvenile bud stage 137.342
SRR8316894Third green stage 97.340
SRR8316900Third green stage 339.247
SRR8316901Third green stage 422.901
SRR8316898Complete white stage 238.390
SRR8316899Complete white stage 572.342
SRR8316903Complete white stage 311.772
SRR8316902Silver flowering stage218.122
SRR8316904Silver flowering stage216.135
SRR8316905Silver flowering stage124.730
SRR8316906Gold flowering stage 358.996
SRR8316907Gold flowering stage 390.253
SRR8316908Gold flowering stage 370.497
SRP132670SRR6706286Control305.242
SRR6706287Light intensity 50%319.539
SRR6706288Light intensity 20%350.586
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1378.726
CNS0095593Slightly white alabastrum(diploid) 2408.184
CNS0095594Slightly white alabastrum(diploid) 3373.166
CNS0095595Whole white alabastrum(diploid) 2396.824
CNS0095596Whole white alabastrum(diploid) 3394.990
CNS0095597Whole white alabastrum(diploid) 4357.848
CNS0095598Silvery flower (diploied) 1464.125
CNS0095599Silvery flower (diploied) 2414.120
CNS0095600Silvery flower (diploied) 3430.305
CNS0095601Golden flower (diploid) 1448.093
CNS0095602Golden flower (diploid) 2412.996
CNS0095603Golden flower (diploid) 3418.899
CNS0095604Slightly white alabastrum(tetraploid) 1284.334
CNS0095605Slightly white alabastrum(tetraploid) 2283.793
CNS0095606Slightly white alabastrum(tetraploid) 3310.914
CNS0095607Whole white alabastrum(tetraploid) 1342.534
CNS0095608Whole white alabastrum(tetraploid) 2314.612
CNS0095609Whole white alabastrum(tetraploid) 3302.009
CNS0095610Silvery flower (tetraploid) 1422.866
CNS0095611Silvery flower (tetraploid) 2349.012
CNS0095612Silvery flower (tetraploid) 3384.560
CNS0095613Golden flower (tetraploid) 1438.954
CNS0095614Golden flower (tetraploid) 2412.596
CNS0095615Golden flower (tetraploid) 3393.337
CRA001975CRR073297Stem 1228.130
CRR073298Stem 2219.291
CRR073299Stem 3238.642
CRR073300Leaf 1291.882
CRR073301Leaf 2302.867
CRR073302Leaf 3303.055
CRR073303Juvenile bud 1318.573
CRR073304Juvenile bud 2358.658
CRR073305Juvenile bud 3277.784
CRR073306Third green 1303.777
CRR073307Third green 2323.099
CRR073308Third green 3294.210
CRR073309Second white 1301.521
CRR073310Second white 2250.775
CRR073311Second white 3188.301
CRR073312Silver flowering 1195.596
CRR073313Silver flowering 2263.857
CRR073314Silver flowering 3168.963
CRR073315Gold flowering 1211.317
CRR073316Gold flowering 2185.199
CRR073317Gold flowering 3162.665
CRR073318Tawny withering 1287.342
CRR073319Tawny withering 2322.149
CRR073320Tawny withering 3292.498