Gene detail

Detail information of GWHGAAZE025306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277585.1	0	PREDICTED: serine/threonine-protein kinase BLUS1 [Vitis vinifera]
COG	YP_003248214.1	1E-28	serine/threonine protein kinase
Swissprot	tr\|O23304\|BLUS1_ARATH	9E-106	Serine/threonine-protein kinase BLUS1
trEMBL	tr\|F6HUZ1\|F6HUZ1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58509.1}
TAIR10	AT5G14720.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59324791	59337095	+
GWHAAZE00000007	mRNA	59324791	59337095	+
GWHAAZE00000007	exon	59324791	59324958	+
GWHAAZE00000007	exon	59326394	59326648	+
GWHAAZE00000007	exon	59327020	59327144	+
GWHAAZE00000007	exon	59327264	59327308	+
GWHAAZE00000007	exon	59327428	59327509	+
GWHAAZE00000007	exon	59327628	59327696	+
GWHAAZE00000007	exon	59327774	59327944	+
GWHAAZE00000007	exon	59328063	59328128	+
GWHAAZE00000007	exon	59330445	59330513	+
GWHAAZE00000007	exon	59330620	59330712	+
GWHAAZE00000007	exon	59330857	59330930	+
GWHAAZE00000007	exon	59331092	59331358	+
GWHAAZE00000007	exon	59332758	59332849	+
GWHAAZE00000007	exon	59333015	59333091	+
GWHAAZE00000007	exon	59334455	59334580	+
GWHAAZE00000007	exon	59334660	59334702	+
GWHAAZE00000007	exon	59334792	59334838	+
GWHAAZE00000007	exon	59335873	59335934	+
GWHAAZE00000007	exon	59336027	59336078	+
GWHAAZE00000007	exon	59337039	59337095	+
GWHAAZE00000007	CDS	59324791	59324958	+
GWHAAZE00000007	CDS	59326394	59326648	+
GWHAAZE00000007	CDS	59327020	59327144	+
GWHAAZE00000007	CDS	59327264	59327308	+
GWHAAZE00000007	CDS	59327428	59327509	+
GWHAAZE00000007	CDS	59327628	59327696	+
GWHAAZE00000007	CDS	59327774	59327944	+
GWHAAZE00000007	CDS	59328063	59328128	+
GWHAAZE00000007	CDS	59330445	59330513	+
GWHAAZE00000007	CDS	59330620	59330712	+
GWHAAZE00000007	CDS	59330857	59330930	+
GWHAAZE00000007	CDS	59331092	59331358	+
GWHAAZE00000007	CDS	59332758	59332849	+
GWHAAZE00000007	CDS	59333015	59333091	+
GWHAAZE00000007	CDS	59334455	59334580	+
GWHAAZE00000007	CDS	59334660	59334702	+
GWHAAZE00000007	CDS	59334792	59334838	+
GWHAAZE00000007	CDS	59335873	59335934	+
GWHAAZE00000007	CDS	59336027	59336078	+
GWHAAZE00000007	CDS	59337039	59337095	+

Transcript Sequence
>GWHTAAZE025340 ATGGAACTGGTGTCAGAAAAAAAGTTTCCCGTCAATGCAGAAGATTACAAGCTATATGAGGAAATTGGAGAAGGTGTTAGTGCCACCGTGCATAGAGCTCTCTGTGTTCCACTTAATGAGATTGTTGCCATCAAGGTCCTTGATCTGGAAAAGTGTAATAATGACCTGGATGGTATCCGCCGAGAGGTTCAAACGATGAGCTTGATTGATCATCCAAATTTACTGCAGGCACATTGCTCGTTCACTACAGGCCATAGCCTTTGGGTTGTGATGCCATACATGGCTGGGGGATCGTGCCTTCATATAATGAAATCTGCTTATCCAGAAGGTTTTGAAGAGCCTGTTATTGCTACATTACTACGTGAGGTCCTTAGAGCTCTAGTTTATCTTCACGCCCATGGTCACATCCACAGAGATGTCAAGGCTGGGAACATATTATTTGATTCTAATGGTGCTATCAAGTTAGCAGACTTCGGAGTATCTGCATGCATGTTTGATACTGGGGATAGACAACGTTCAAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTGCATGGATATGACTTTAAAGCAGACATCTGGTCATTTGGAATTACTGCACTTGAACTAGCCCATGGACATGCACCATTTTCCAAGTACCCGCCAATGAAGGTTCTTCTGATGACCCTACAAAATGCACCGCCGGGTCTTGATTACGAAAGGGACAAGAGATTTTCAAAGTCTTTCAAAGAAATGGTAGCTGCTTGCTTGGTAAAAGATCCAAAGAAACGCCCTTCTTCAGAGAAGCTTTTGAAGCATCATTTCTTCAAAAATGCTCGTTCAACTGATTATTTGGCACGCACTATTCTTGACGGCCTTTCCCCTCTAGGTGATCGTTTTAGAATGCTAAAGGCAAAGGAAGCGGCTTTGCTAGTACAGAATAAGGCATTGTATGGTGATAAGGAGCATTTATCACAGCAAGAATACATTCGAGGAATCAGTGCCTGGAATTTCAATCTGGAGGATTTGAAGAATCAGGCTGCCCTTATTCAGGATTATGATGGCATTTCTAATGCCGAAGAAGATCCTAATGTGAGTGGAAGACATAAGGATGGATCCCATGAGAGAGCTAATCTCGAGGATGGGCTCAGTGATAGTCCTGATTTGGAGAATTCACTTGCTGCGTTTCCTATTAAACCTCTTCAGGCTCTCAAAGATTGTTTTGATGTCTGTGAGGATGATGTGGCTACCGGTGGTCCTAATTGGAAAGATTCCGCACAATCAGATTCTGAACTGCAGAGACAAACTCAGTCATTGGCTAAAGCTGAGGAACAGGAGGCTCGAAGAGATGATGGTGATATGCTGGGACAAAGTAGCTCCTTATCACGATCTGCTATTCCTGGGCATAAACCTTTTTTGAGCGGTTCACTGCTACAGGATAATGTTCATTCTCCTAAGAAGTTCATTGGTGATGGAGACAGGGATCATTTGCTCTCGAGATACCCATCTGAGCGGAACTATAGTGGTCCACTGCAGTATCGGCAGAAGAAAGACATTAACAACACTACATCCGCTGAGGATTCATCTGAAGGAGCCGTTGTCCAGCGTAAGGGCCGTTTTAAAGTCACATCGGCAGATTTGAGTCCCAAGGCTCCTACAAATTGCATCTCAAACCCAGCTTCTGGAGGTTCAATCAGTCCAACCACCTCAACCCTTGCAGCTGCACCAATTCTTCCTTCATTGCAATTCATTTTGCAGCAGAACACTATGCAAAGAGAAGAATTAGTTAAATTGATCAAGTATGTTGAGCAAACCTCTGGCAATTCCATGGAGTTTGCTGAGGCAGGAGCTAATGAGCTTTCACAAATTCCTCATGCTACTGCTAAGGAGAGAGAGCTGCAGGCTCAGGTTATTCAGTTGCAACAAAGCGTTGGGAGTGTGGTCGAAGAATTGCAGAGACAGAAGATGAAAAATGCTCAGTTGGAAAAGAAATTGAATGCTTTGTTGGTTAAGAAAGAGGAAAAGAGCAGCAGATGA

Network for GWHGAAZE025306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	16	277	7.20E-58

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE20-Fray

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.121
	SRR3591706	second leaf	28.028
	SRR3591707	mature leaf	25.834
	SRR3591708	Shoot apex	37.293
	SRR3591709	Stem	60.162
	SRR3591710	White floral bud	54.650
	SRR3591711	White flower	52.608
	SRR3591712	Green floral bud	41.786
	SRR3591713	Yellow flower	45.295
SRP173429	SRR8316895	Juvenile bud stage	20.917
	SRR8316896	Juvenile bud stage	24.295
	SRR8316897	Juvenile bud stage	14.268
	SRR8316894	Third green stage	11.595
	SRR8316900	Third green stage	25.968
	SRR8316901	Third green stage	27.402
	SRR8316898	Complete white stage	18.455
	SRR8316899	Complete white stage	45.444
	SRR8316903	Complete white stage	36.101
	SRR8316902	Silver flowering stage	21.427
	SRR8316904	Silver flowering stage	33.602
	SRR8316905	Silver flowering stage	15.011
	SRR8316906	Gold flowering stage	50.763
	SRR8316907	Gold flowering stage	45.353
	SRR8316908	Gold flowering stage	50.880
SRP132670	SRR6706286	Control	24.509
	SRR6706287	Light intensity 50%	27.689
	SRR6706288	Light intensity 20%	29.260
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.666
	CNS0095593	Slightly white alabastrum(diploid) 2	19.306
	CNS0095594	Slightly white alabastrum(diploid) 3	16.644
	CNS0095595	Whole white alabastrum(diploid) 2	15.441
	CNS0095596	Whole white alabastrum(diploid) 3	12.872
	CNS0095597	Whole white alabastrum(diploid) 4	16.974
	CNS0095598	Silvery flower (diploied) 1	29.375
	CNS0095599	Silvery flower (diploied) 2	21.810
	CNS0095600	Silvery flower (diploied) 3	39.890
	CNS0095601	Golden flower (diploid) 1	25.619
	CNS0095602	Golden flower (diploid) 2	35.670
	CNS0095603	Golden flower (diploid) 3	33.661
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.860
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.731
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.003
	CNS0095610	Silvery flower (tetraploid) 1	43.961
	CNS0095611	Silvery flower (tetraploid) 2	41.526
	CNS0095612	Silvery flower (tetraploid) 3	41.286
	CNS0095613	Golden flower (tetraploid) 1	26.951
	CNS0095614	Golden flower (tetraploid) 2	31.403
	CNS0095615	Golden flower (tetraploid) 3	36.062
CRA001975	CRR073297	Stem 1	34.904
	CRR073298	Stem 2	33.040
	CRR073299	Stem 3	29.669
	CRR073300	Leaf 1	39.206
	CRR073301	Leaf 2	34.107
	CRR073302	Leaf 3	27.292
	CRR073303	Juvenile bud 1	34.938
	CRR073304	Juvenile bud 2	25.346
	CRR073305	Juvenile bud 3	41.366
	CRR073306	Third green 1	19.137
	CRR073307	Third green 2	17.652
	CRR073308	Third green 3	20.649
	CRR073309	Second white 1	17.509
	CRR073310	Second white 2	23.052
	CRR073311	Second white 3	24.405
	CRR073312	Silver flowering 1	17.254
	CRR073313	Silver flowering 2	11.866
	CRR073314	Silver flowering 3	15.002
	CRR073315	Gold flowering 1	18.922
	CRR073316	Gold flowering 2	29.730
	CRR073317	Gold flowering 3	16.064
	CRR073318	Tawny withering 1	39.250
	CRR073319	Tawny withering 2	32.294
	CRR073320	Tawny withering 3	40.260