Detail information of GWHGAAZE025293


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010242995.11.6049E-87PREDICTED: uncharacterized protein At4g28440 [Nelumbo nucifera]
COGYP_003816198.18E-11single-strand DNA-binding protein
Swissprottr|O49453|Y4844_ARATH3E-57Uncharacterized protein At4g28440
trEMBLtr|F6HUZ8|F6HUZ8_VITVI1E-88Putative uncharacterized protein {ECO:0000313|EMBL:CCB58516.1}
TAIR10AT1G23750.11E-53Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5915713859159182-
GWHAAZE00000007mRNA5915713859159182-
GWHAAZE00000007exon5915910859159182-
GWHAAZE00000007exon5915810159158371-
GWHAAZE00000007exon5915713859157328-
GWHAAZE00000007five_prime_UTR5915910859159182-
GWHAAZE00000007five_prime_UTR5915834559158371-
GWHAAZE00000007CDS5915810159158344-
GWHAAZE00000007CDS5915713859157328-
Transcript Sequence

Network for GWHGAAZE025293

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf106.832
SRR3591706second leaf42.675
SRR3591707mature leaf54.352
SRR3591708Shoot apex87.524
SRR3591709Stem138.773
SRR3591710White floral bud113.754
SRR3591711White flower116.769
SRR3591712Green floral bud129.428
SRR3591713Yellow flower101.598
SRP173429 SRR8316895Juvenile bud stage 75.238
SRR8316896Juvenile bud stage 121.574
SRR8316897Juvenile bud stage 55.120
SRR8316894Third green stage 43.935
SRR8316900Third green stage 112.477
SRR8316901Third green stage 111.390
SRR8316898Complete white stage 41.894
SRR8316899Complete white stage 124.812
SRR8316903Complete white stage 68.732
SRR8316902Silver flowering stage44.832
SRR8316904Silver flowering stage58.568
SRR8316905Silver flowering stage29.708
SRR8316906Gold flowering stage 87.455
SRR8316907Gold flowering stage 91.469
SRR8316908Gold flowering stage 103.619
SRP132670SRR6706286Control190.841
SRR6706287Light intensity 50%178.907
SRR6706288Light intensity 20%190.134
CNP0000432CNS0095592Slightly white alabastrum(diploid) 189.678
CNS0095593Slightly white alabastrum(diploid) 282.929
CNS0095594Slightly white alabastrum(diploid) 396.248
CNS0095595Whole white alabastrum(diploid) 293.640
CNS0095596Whole white alabastrum(diploid) 3105.597
CNS0095597Whole white alabastrum(diploid) 4102.170
CNS0095598Silvery flower (diploied) 157.996
CNS0095599Silvery flower (diploied) 269.925
CNS0095600Silvery flower (diploied) 377.346
CNS0095601Golden flower (diploid) 172.627
CNS0095602Golden flower (diploid) 263.123
CNS0095603Golden flower (diploid) 357.532
CNS0095604Slightly white alabastrum(tetraploid) 1116.092
CNS0095605Slightly white alabastrum(tetraploid) 2114.227
CNS0095606Slightly white alabastrum(tetraploid) 379.969
CNS0095607Whole white alabastrum(tetraploid) 1118.318
CNS0095608Whole white alabastrum(tetraploid) 2116.573
CNS0095609Whole white alabastrum(tetraploid) 3106.528
CNS0095610Silvery flower (tetraploid) 190.069
CNS0095611Silvery flower (tetraploid) 269.345
CNS0095612Silvery flower (tetraploid) 356.540
CNS0095613Golden flower (tetraploid) 166.340
CNS0095614Golden flower (tetraploid) 273.678
CNS0095615Golden flower (tetraploid) 352.940
CRA001975CRR073297Stem 1114.064
CRR073298Stem 294.710
CRR073299Stem 3116.874
CRR073300Leaf 1114.340
CRR073301Leaf 2106.411
CRR073302Leaf 3113.587
CRR073303Juvenile bud 1105.507
CRR073304Juvenile bud 299.830
CRR073305Juvenile bud 3113.790
CRR073306Third green 148.290
CRR073307Third green 256.793
CRR073308Third green 359.139
CRR073309Second white 135.888
CRR073310Second white 236.753
CRR073311Second white 327.245
CRR073312Silver flowering 135.439
CRR073313Silver flowering 233.356
CRR073314Silver flowering 328.608
CRR073315Gold flowering 163.381
CRR073316Gold flowering 264.477
CRR073317Gold flowering 361.896
CRR073318Tawny withering 1114.771
CRR073319Tawny withering 2103.346
CRR073320Tawny withering 3100.084