Gene detail

Detail information of GWHGAAZE025278

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009597947.1	0	PREDICTED: probable inactive receptor kinase At2g26730 [Nicotiana tomentosiformis]
COG	YP_006921214.1	8E-11	serine/threonine-protein kinase Sps
Swissprot	tr\|O48788\|Y2267_ARATH	6E-105	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|A0A068U1V3\|A0A068U1V3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02139.1}
TAIR10	AT2G26730.1	2E-84	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58938375	58941195	+
GWHAAZE00000007	mRNA	58938375	58941195	+
GWHAAZE00000007	exon	58938375	58939677	+
GWHAAZE00000007	exon	58940654	58941195	+
GWHAAZE00000007	CDS	58938375	58939677	+
GWHAAZE00000007	CDS	58940654	58941195	+

Transcript Sequence
>GWHTAAZE025312 ATGAATCAAATCCCCATTTGGGTCCTCTTCATTTCACTTTCTTTTCTCTTATACACAACAAACTCACAAAGCATTGAGGTCAAAGAAACACTGCTCAATTTTCTCACACAACTTTCAAACACAAATGGCATATTGGATCCCAATCTTGGTTGGAATTTATCTTCTGATCCATGCAAAACTCCATGGGTAGGCATCTTTTGCGATAATCGTACACTTTCTGTAAACAAAATCTTGCTTAATGGCTTCAATTTCTCGGGCACTTTCAATGCTTACACTCTTTGCAACGTACAATCTCTTGCTTCATCTCTCTCCGTTATTAGTCTCAACGACAACAATCTCCATGCAGAGAATTTGAACGATATGTCAAAATGTAGACACCTCACTCACTTACATATAAGCGGAAACCAATTCTCGGCACCACTTCCGAATTCTTTCTCAAGATTGAATAATCTCAAAAGACTCGATATATCACGCAATAAATTCTCTGGTGACTTGCCCAATTTGGCCCGAATCTCAGGCGTAACAGAGTTTCTTGCTCAACACAATGAGATCAGCGGGCCCATACCCACCTTCGATTTTTCAAATTTTGATGCATTTAATGTCTCTTTCAACAATTTCAGTGGTCCAATCCCAGAAGGAGGTAATATTTTCCCAATCAACAGCTACTCAAACAATCCTCAATTATGCGGTGAGCCATTACCAAAAGAATGCCCACCATTCAATTGGTCCTCAGGAAAAGGACCGACAAAAGGGCTATCAAAGGATAAAATTATAATGTACTCCGGCTATTTCCTCCTTGGTGTAGCAGTTCTTCTTGTCGTCATTCTTAAATTTTGCAAAAGACACCAGTCCAAGAAAATATCGGTTGATAAAAATTTAGCAGTAATGGATGATATTAGCATGAAGCCTGGTTCTTCTTCGACCGATGACAAAGGAGGCTTGAGCAAATCAGTTATTTCGGTTGAGCCTGGAGCGGTTTCTTCATCACTTACAGTTCTTTCGAGTCCAGAGGTGAATGGGCTAAAATTCGACGAGTTGTTAAAGGCTCCAGCTGAGTTTATTGGGAGAGGAAAACACGGGAGTGTTTATAAGGTTACATGTGAAGATCGAGGTTTAACTGTTGCTGTTAAAAGGATCAAAGATTGGGCAATGGAGACTGGCGATTTTAAGAAGAGGATGCAGAGGTTGGATCAAGTGAAGCATCCAAATGTTTTGCCTGCAGTGGCTTTTTATTGTTCTAAACAGGAGAAGCTTTTGGTTTATGAATATCAGCCTAATGGAAGTCTTTTCAAGCTTCTTCATAGAATACAAATGGGCCAAACCTTTGGGTGGAGCAGCAGGCTAGAATTTGCAGCCACCATAGCTGAATCCTTAGCATTCATGCACCAAGAACTCCACCAAGACAAAATTCCCCACGGTAACCTAAAATCATCAAACATTTTACTTAACAAAAACATGGAACCAATCATCACCGAATACGGCCTAATGGAAGAAGACAATAATCAAGACCTTGATCAAAATGAGGCCAAATTCAAAGCGGACATTTACGGATTTGGGGTCATACTTCTGGAATTGCTTACGGGGAAGGTATCGGTGGCTGAAAATGGGTTGGACTTGGCAAAATGGGTGGTGTCTGTGGTGAGAGAAGAGTGGACAGTTGAGGTTTTTGACAAAATGCTTGTTAGGGAAGGTGCTAGTGAAGAGAGGATGGTGAGTTTGCTTCAAGTTGCTATTAAGTGTGTGGATAAATCGCCGGTGGTTAGGCCTAGTATGGAGCATGTTGCTATGATGATTAATGGAATTAAAGTGGAGGAAGAGAGATCTATGGATGTTTCTCTACAATGA

Network for GWHGAAZE025278

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	352	594	1.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.704
	SRR3591706	second leaf	1.000
	SRR3591707	mature leaf	0.090
	SRR3591708	Shoot apex	2.236
	SRR3591709	Stem	0.631
	SRR3591710	White floral bud	0.450
	SRR3591711	White flower	0.299
	SRR3591712	Green floral bud	1.014
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.253
	SRR8316896	Juvenile bud stage	0.193
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.113
	SRR8316900	Third green stage	0.051
	SRR8316901	Third green stage	0.307
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.080
	SRR6706287	Light intensity 50%	0.179
	SRR6706288	Light intensity 20%	0.165
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.377
	CNS0095593	Slightly white alabastrum(diploid) 2	0.081
	CNS0095594	Slightly white alabastrum(diploid) 3	0.220
	CNS0095595	Whole white alabastrum(diploid) 2	0.254
	CNS0095596	Whole white alabastrum(diploid) 3	0.067
	CNS0095597	Whole white alabastrum(diploid) 4	0.021
	CNS0095598	Silvery flower (diploied) 1	0.097
	CNS0095599	Silvery flower (diploied) 2	0.168
	CNS0095600	Silvery flower (diploied) 3	0.155
	CNS0095601	Golden flower (diploid) 1	0.050
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.412
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.680
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.201
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.132
	CNS0095610	Silvery flower (tetraploid) 1	0.051
	CNS0095611	Silvery flower (tetraploid) 2	0.125
	CNS0095612	Silvery flower (tetraploid) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.158
	CRR073298	Stem 2	0.265
	CRR073299	Stem 3	0.043
	CRR073300	Leaf 1	0.103
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.027
	CRR073304	Juvenile bud 2	0.038
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.091
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.267
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.306
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000