Detail information of GWHGAAZE025250


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010324884.11.0065E-167PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X2 [Solanum lycopersicum]
Swissprottr|Q8L7A4|AGD11_ARATH1E-152Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBLtr|K4CK73|K4CK73_SOLLC9E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g043140.2.1}
TAIR10AT3G07940.15E-116Calcium-dependent ARF-type GTPase activating protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5814998758161424+
GWHAAZE00000007mRNA5814998758161424+
GWHAAZE00000007exon5814998758150069+
GWHAAZE00000007exon5815492558155005+
GWHAAZE00000007exon5815782258158010+
GWHAAZE00000007exon5815810058158340+
GWHAAZE00000007exon5816019958160315+
GWHAAZE00000007exon5816042858160523+
GWHAAZE00000007exon5816113758161424+
GWHAAZE00000007CDS5814998758150069+
GWHAAZE00000007CDS5815492558155005+
GWHAAZE00000007CDS5815782258158010+
GWHAAZE00000007CDS5815810058158340+
GWHAAZE00000007CDS5816019958160315+
GWHAAZE00000007CDS5816042858160523+
GWHAAZE00000007CDS5816113758161424+
Transcript Sequence

Network for GWHGAAZE025250

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.19ArfGap51281.10E-31
PF00168.31C22072991.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096molecular_functionGTPase activator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.945
SRR3591706second leaf17.484
SRR3591707mature leaf25.115
SRR3591708Shoot apex17.100
SRR3591709Stem38.293
SRR3591710White floral bud42.742
SRR3591711White flower22.957
SRR3591712Green floral bud31.834
SRR3591713Yellow flower24.169
SRP173429 SRR8316895Juvenile bud stage 14.203
SRR8316896Juvenile bud stage 22.680
SRR8316897Juvenile bud stage 13.565
SRR8316894Third green stage 9.336
SRR8316900Third green stage 27.174
SRR8316901Third green stage 28.230
SRR8316898Complete white stage 14.396
SRR8316899Complete white stage 40.467
SRR8316903Complete white stage 22.589
SRR8316902Silver flowering stage10.384
SRR8316904Silver flowering stage14.225
SRR8316905Silver flowering stage6.413
SRR8316906Gold flowering stage 24.393
SRR8316907Gold flowering stage 24.771
SRR8316908Gold flowering stage 22.674
SRP132670SRR6706286Control24.293
SRR6706287Light intensity 50%25.474
SRR6706288Light intensity 20%22.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.162
CNS0095593Slightly white alabastrum(diploid) 220.849
CNS0095594Slightly white alabastrum(diploid) 324.635
CNS0095595Whole white alabastrum(diploid) 228.051
CNS0095596Whole white alabastrum(diploid) 332.372
CNS0095597Whole white alabastrum(diploid) 443.610
CNS0095598Silvery flower (diploied) 125.387
CNS0095599Silvery flower (diploied) 221.452
CNS0095600Silvery flower (diploied) 321.724
CNS0095601Golden flower (diploid) 125.205
CNS0095602Golden flower (diploid) 223.219
CNS0095603Golden flower (diploid) 320.951
CNS0095604Slightly white alabastrum(tetraploid) 124.088
CNS0095605Slightly white alabastrum(tetraploid) 224.884
CNS0095606Slightly white alabastrum(tetraploid) 316.109
CNS0095607Whole white alabastrum(tetraploid) 137.564
CNS0095608Whole white alabastrum(tetraploid) 239.531
CNS0095609Whole white alabastrum(tetraploid) 324.145
CNS0095610Silvery flower (tetraploid) 115.506
CNS0095611Silvery flower (tetraploid) 217.709
CNS0095612Silvery flower (tetraploid) 318.663
CNS0095613Golden flower (tetraploid) 111.347
CNS0095614Golden flower (tetraploid) 218.028
CNS0095615Golden flower (tetraploid) 316.555
CRA001975CRR073297Stem 126.148
CRR073298Stem 228.342
CRR073299Stem 320.600
CRR073300Leaf 130.838
CRR073301Leaf 223.997
CRR073302Leaf 316.368
CRR073303Juvenile bud 121.504
CRR073304Juvenile bud 214.028
CRR073305Juvenile bud 317.570
CRR073306Third green 112.189
CRR073307Third green 210.831
CRR073308Third green 311.609
CRR073309Second white 110.318
CRR073310Second white 29.926
CRR073311Second white 310.533
CRR073312Silver flowering 115.179
CRR073313Silver flowering 212.058
CRR073314Silver flowering 36.315
CRR073315Gold flowering 112.193
CRR073316Gold flowering 216.999
CRR073317Gold flowering 38.437
CRR073318Tawny withering 127.823
CRR073319Tawny withering 242.007
CRR073320Tawny withering 330.428