Gene detail

Detail information of GWHGAAZE025248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659159.1	0	PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8S3N1\|SINA5_ARATH	3E-170	E3 ubiquitin-protein ligase SINAT5
trEMBL	tr\|A5CAJ5\|A5CAJ5_VITVI	0	E3 ubiquitin-protein ligase {ECO:0000256\|RuleBase:RU201113}
TAIR10	AT3G61790.1	2E-133	Protein with RING/U-box and TRAF-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58091925	58098423	-
GWHAAZE00000007	mRNA	58091925	58098423	-
GWHAAZE00000007	exon	58098345	58098423	-
GWHAAZE00000007	exon	58094249	58094491	-
GWHAAZE00000007	exon	58092695	58093081	-
GWHAAZE00000007	exon	58091925	58092245	-
GWHAAZE00000007	five_prime_UTR	58098345	58098423	-
GWHAAZE00000007	five_prime_UTR	58094459	58094491	-
GWHAAZE00000007	CDS	58094249	58094458	-
GWHAAZE00000007	CDS	58092695	58093081	-
GWHAAZE00000007	CDS	58091925	58092245	-

Transcript Sequence
>GWHTAAZE025282 CAACTCCAATTTTATTAGAGACAACAAGATTTGAACCTATTTGCCCTCGTTAGGGTTTTGATTTGAAAAACTGTTCCAGCATATGAAGTGAACAGTTGGGTCCTACCTAACTATGGCAATGGGAAACTCTTATTTTGATGACTTGAGGATTAAACCTGAGGTGATTGATCCTCCTCAGAATGAAGCAATGATGGATGTTATTGAACATGTGAATGATCCCACACAAAATGTTGCAAAACCTAATGTGGCCGTCACTAGCAATGTTCGCGATTTATTGGAGTGTCCAGTGTGCTTAAATGCTATGTACCCTCCTATACACCAGTGCTCAAATGGTCACACACTGTGTTCAGGTTGCAAGCCAAGGGTGCACAACCGGTGCCCAACTTGCAGGCACGAACTCGGGAACATAAGATGCCTTGCCTTGGAGAAAGTGGCTGCATCTCTCGAACTTCCTTGTAAATATCAGAGTTTTGGGTGTGTGGGCATCTACCCTTACTACAGCAAGCTAAAGCACGAATCTCAATGCGTCTTCAGACCTTATAACTGCCCTTATGCTGGATCTGAGTGCACAGTCATTGGCGATATCCCCTATCTCGTGGCCCATCTAAAAGACGATCACAAAGTTGACATGCACAGTGGCAGCACTTTTAACCATCGTTATGTCAAATCAAATCCACACGAGGTTGAGAACGCAACATGGATGCTTACGGTTTTTAGTTGCTTTGGGCAGTACTTCTGCTTGCATTTCGAAGCATTCCAGCTGGGGATGGCTCCAGTCTACATAGCGTTCTTGAGATTCATGGGCGACGATAACGAGGCAAAGAATTACACCTACAGCCTTGAGGTCGGTGGGAATGGTAGGAAGATGACGTGGCAGGGGGTGCCCCGAACCATAAGGGACAGCCATCGAAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAACGCAACATGGCCCTCTTCTTTTCCGGGGGTGATCGTAAAGAACTGAAGCTTAGGGTTACCGGTAGGATTTGGAAAGAACAGTAA

Network for GWHGAAZE025248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03145.17	Sina	99	298	2.90E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04506	SIAH1	Ubiquitin mediated proteolysis	map04120
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0007275	biological_process	multicellular organism development
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.812
	SRR3591706	second leaf	17.806
	SRR3591707	mature leaf	16.913
	SRR3591708	Shoot apex	38.538
	SRR3591709	Stem	28.863
	SRR3591710	White floral bud	18.176
	SRR3591711	White flower	29.870
	SRR3591712	Green floral bud	19.608
	SRR3591713	Yellow flower	27.420
SRP173429	SRR8316895	Juvenile bud stage	24.356
	SRR8316896	Juvenile bud stage	24.908
	SRR8316897	Juvenile bud stage	16.475
	SRR8316894	Third green stage	8.961
	SRR8316900	Third green stage	23.841
	SRR8316901	Third green stage	27.730
	SRR8316898	Complete white stage	8.706
	SRR8316899	Complete white stage	38.975
	SRR8316903	Complete white stage	11.326
	SRR8316902	Silver flowering stage	10.802
	SRR8316904	Silver flowering stage	14.035
	SRR8316905	Silver flowering stage	6.378
	SRR8316906	Gold flowering stage	23.806
	SRR8316907	Gold flowering stage	24.006
	SRR8316908	Gold flowering stage	25.982
SRP132670	SRR6706286	Control	21.214
	SRR6706287	Light intensity 50%	22.139
	SRR6706288	Light intensity 20%	22.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.885
	CNS0095593	Slightly white alabastrum(diploid) 2	25.548
	CNS0095594	Slightly white alabastrum(diploid) 3	24.659
	CNS0095595	Whole white alabastrum(diploid) 2	20.533
	CNS0095596	Whole white alabastrum(diploid) 3	17.262
	CNS0095597	Whole white alabastrum(diploid) 4	15.719
	CNS0095598	Silvery flower (diploied) 1	22.664
	CNS0095599	Silvery flower (diploied) 2	22.252
	CNS0095600	Silvery flower (diploied) 3	25.745
	CNS0095601	Golden flower (diploid) 1	21.475
	CNS0095602	Golden flower (diploid) 2	24.815
	CNS0095603	Golden flower (diploid) 3	28.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.629
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.773
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.780
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.811
	CNS0095610	Silvery flower (tetraploid) 1	18.902
	CNS0095611	Silvery flower (tetraploid) 2	19.746
	CNS0095612	Silvery flower (tetraploid) 3	14.875
	CNS0095613	Golden flower (tetraploid) 1	13.693
	CNS0095614	Golden flower (tetraploid) 2	18.135
	CNS0095615	Golden flower (tetraploid) 3	13.907
CRA001975	CRR073297	Stem 1	25.823
	CRR073298	Stem 2	23.489
	CRR073299	Stem 3	26.967
	CRR073300	Leaf 1	21.765
	CRR073301	Leaf 2	23.496
	CRR073302	Leaf 3	20.917
	CRR073303	Juvenile bud 1	17.142
	CRR073304	Juvenile bud 2	16.558
	CRR073305	Juvenile bud 3	19.292
	CRR073306	Third green 1	14.380
	CRR073307	Third green 2	12.361
	CRR073308	Third green 3	11.421
	CRR073309	Second white 1	19.241
	CRR073310	Second white 2	22.058
	CRR073311	Second white 3	17.517
	CRR073312	Silver flowering 1	22.365
	CRR073313	Silver flowering 2	25.714
	CRR073314	Silver flowering 3	22.733
	CRR073315	Gold flowering 1	19.594
	CRR073316	Gold flowering 2	23.030
	CRR073317	Gold flowering 3	16.281
	CRR073318	Tawny withering 1	33.012
	CRR073319	Tawny withering 2	31.282
	CRR073320	Tawny withering 3	32.894