Gene detail

Detail information of GWHGAAZE025247

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091831.1	0	PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum]
COG	YP_006426679.1	1E-126	orotate phosphoribosyltransferase
Swissprot	tr\|Q42942\|UMPS_TOBAC	0	Orotidine 5'-phosphate decarboxylase (Fragment)
trEMBL	tr\|M1BQD4\|M1BQD4_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400050490}
TAIR10	AT3G54470.1	0	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58083334	58089748	+
GWHAAZE00000007	mRNA	58083334	58089748	+
GWHAAZE00000007	exon	58083334	58083669	+
GWHAAZE00000007	exon	58084254	58084712	+
GWHAAZE00000007	exon	58085873	58085956	+
GWHAAZE00000007	exon	58087024	58087106	+
GWHAAZE00000007	exon	58087341	58087428	+
GWHAAZE00000007	exon	58088456	58088710	+
GWHAAZE00000007	exon	58089588	58089748	+
GWHAAZE00000007	CDS	58083334	58083669	+
GWHAAZE00000007	CDS	58084254	58084712	+
GWHAAZE00000007	CDS	58085873	58085956	+
GWHAAZE00000007	CDS	58087024	58087106	+
GWHAAZE00000007	CDS	58087341	58087428	+
GWHAAZE00000007	CDS	58088456	58088710	+
GWHAAZE00000007	CDS	58089588	58089716	+
GWHAAZE00000007	three_prime_UTR	58089717	58089748	+

Transcript Sequence
>GWHTAAZE025281 ATGTCATCAATGGAGTCTCTCATTCTGCAACTCCATGACATATCGGCGGTGAAGTTCGGAAACTTCAAGCTGAAGTCCGGCATATACTCCCCTGTCTACATCGACCTCCGCTTAATCGTATCTTACCCTAATCTACTCAAACAGATATCCCAAACCCTAGTTTCTTCGATCCCTTCCACTGCCTCTTACGACGTCGTTTGTGGCGTACCTTACACAGCCCTGCCTATTGCTACTTGTATCTCCACCGCCTCCGATGTTCCCATGGTTATGCGCCGCAAGGAGGTCAAGGATTACGGCACCGCCAAGGCCATCGAAGGCGCTTTCAAGGACAATCAGGTTTGTTTGATAGTCGAAGACTTGGTAACCAGCGGTGCATCGGTGCTCGAGACAGCTGCACCATTGCGGGCGGTGGGGCTTAGGGTCACTGACGCGGTGGTGATGATTGACAGGGAGCAAGGGGGGAGGGAGAATTTGGCAGATAATGGGATTAAGTTACATGCGATGGTGAAATTGACTGAGATGGTTAGGATTTTAAAGGAGAAGGGTAAGGTTTCAGAGGAGACTGAAAAGCAAGTGCTTAAGTTTTTGGAGGAAAATAGGAAGGTGGCAGTGCCGGCGGTGGCTGCCACTGTAAAGGATAAGGTTAAGCTTAGGGTTCGATATGAGGAGAGAGCGGCGATGGCAAAGAATCCAACAGGGAAGAGGTTGTTTGAAATAATGGTGAAGAAAGAGAGCAATTTATCTGTGGCTGCTGATGTCGCCACCGCTGCTGAGTTGCTCGACATTGCCGAGAAGGTTGGACCTGAGATCTGTATGTTAAAGACCCATGTCGATATATTGCCTGATTTCACCCCGGATTTTGGATCAAAACTTCGCTCGATTGCGGAGAAACACAATTTCTTAATCTTTGAAGACCGGAAGTTTGCTGACATTGGAAACACGGTAACAATGCAGTATGAGGGAGGTATCTTTCGTATAGCAGATTGGGCAGATATAGTAAATGCTCACATTATCCCAGGTCCTGGAATTGTTGATGGCCTCAAACTAAAGGGTTTGCCTCGTGGTAGGGGACTGATACTACTTGCTGAAATGAGTTCGAAGGGTAACCTAGCCACTGGAGAGTACACAGCAGCAGCAGTGAAAATTGCAGAGGAGCATTCGGATTTTGTGATAGGGTTCATATCTGTTAATCCAGCATCATGGCCTGGTGGACAAGGAAACCCGGCCTTAATTCATGCTACCCCTGGTGTTCAATTGGTCAAAGGCGGTGATGCTCTCGGCCAGCAATACAACACCCCTGATTCGGTGATAGCTGATAGAGGGAGTGACATAATTATTGTGGGACGTGGAATTATAAAGGCGACAAACCCTGCAGAGGAGGCTCGAGAGTACCGTCTCCAAGGATGGAATGCATATTTGATGAACTGCAAATAAGCCTTGCTTTCCCTCTACGTTAATATTGATCC

Network for GWHGAAZE025247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00156.28	Pribosyltran	48	156	1.20E-08
PF00215.25	OMPdecase	245	464	1.60E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13421	UMPS	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0006207	biological_process	'de novo' pyrimidine nucleobase biosynthetic process
GO:0009116	biological_process	nucleoside metabolic process
GO:0044205	biological_process	'de novo' UMP biosynthetic process
GO:0004588	molecular_function	orotate phosphoribosyltransferase activity
GO:0003824	molecular_function	catalytic activity
GO:0004590	molecular_function	orotidine-5'-phosphate decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.971
	SRR3591706	second leaf	23.760
	SRR3591707	mature leaf	23.629
	SRR3591708	Shoot apex	71.256
	SRR3591709	Stem	38.831
	SRR3591710	White floral bud	38.869
	SRR3591711	White flower	50.400
	SRR3591712	Green floral bud	60.950
	SRR3591713	Yellow flower	43.503
SRP173429	SRR8316895	Juvenile bud stage	50.969
	SRR8316896	Juvenile bud stage	79.663
	SRR8316897	Juvenile bud stage	36.976
	SRR8316894	Third green stage	27.968
	SRR8316900	Third green stage	86.369
	SRR8316901	Third green stage	78.109
	SRR8316898	Complete white stage	16.402
	SRR8316899	Complete white stage	76.927
	SRR8316903	Complete white stage	26.592
	SRR8316902	Silver flowering stage	14.220
	SRR8316904	Silver flowering stage	16.709
	SRR8316905	Silver flowering stage	8.389
	SRR8316906	Gold flowering stage	28.558
	SRR8316907	Gold flowering stage	32.611
	SRR8316908	Gold flowering stage	34.133
SRP132670	SRR6706286	Control	96.293
	SRR6706287	Light intensity 50%	100.540
	SRR6706288	Light intensity 20%	104.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.728
	CNS0095593	Slightly white alabastrum(diploid) 2	57.869
	CNS0095594	Slightly white alabastrum(diploid) 3	56.077
	CNS0095595	Whole white alabastrum(diploid) 2	52.749
	CNS0095596	Whole white alabastrum(diploid) 3	55.003
	CNS0095597	Whole white alabastrum(diploid) 4	48.637
	CNS0095598	Silvery flower (diploied) 1	50.043
	CNS0095599	Silvery flower (diploied) 2	42.609
	CNS0095600	Silvery flower (diploied) 3	54.615
	CNS0095601	Golden flower (diploid) 1	37.436
	CNS0095602	Golden flower (diploid) 2	48.638
	CNS0095603	Golden flower (diploid) 3	49.722
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.882
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.431
	CNS0095606	Slightly white alabastrum(tetraploid) 3	96.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.311
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.589
	CNS0095610	Silvery flower (tetraploid) 1	51.314
	CNS0095611	Silvery flower (tetraploid) 2	54.335
	CNS0095612	Silvery flower (tetraploid) 3	39.691
	CNS0095613	Golden flower (tetraploid) 1	27.850
	CNS0095614	Golden flower (tetraploid) 2	45.006
	CNS0095615	Golden flower (tetraploid) 3	24.140
CRA001975	CRR073297	Stem 1	63.074
	CRR073298	Stem 2	55.717
	CRR073299	Stem 3	67.729
	CRR073300	Leaf 1	58.095
	CRR073301	Leaf 2	59.163
	CRR073302	Leaf 3	65.097
	CRR073303	Juvenile bud 1	63.401
	CRR073304	Juvenile bud 2	44.831
	CRR073305	Juvenile bud 3	71.333
	CRR073306	Third green 1	9.788
	CRR073307	Third green 2	10.657
	CRR073308	Third green 3	10.800
	CRR073309	Second white 1	18.847
	CRR073310	Second white 2	13.692
	CRR073311	Second white 3	16.072
	CRR073312	Silver flowering 1	13.578
	CRR073313	Silver flowering 2	17.386
	CRR073314	Silver flowering 3	11.913
	CRR073315	Gold flowering 1	24.912
	CRR073316	Gold flowering 2	32.799
	CRR073317	Gold flowering 3	25.800
	CRR073318	Tawny withering 1	41.203
	CRR073319	Tawny withering 2	28.383
	CRR073320	Tawny withering 3	43.242