Detail information of GWHGAAZE025225


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI24963.35.4103E-155unnamed protein product [Vitis vinifera]
COGYP_001658677.13E-9850S ribosomal protein L1
Swissprottr|Q9LY66|RK1_ARATH9E-14550S ribosomal protein L1, chloroplastic (Precursor)
trEMBLtr|F6HBE6|F6HBE6_VITVI8E-155Putative uncharacterized protein {ECO:0000313|EMBL:CCB49545.1}
TAIR10AT3G63490.15E-116Ribosomal protein L1p/L10e family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5768236657687663-
GWHAAZE00000007mRNA5768236657687663-
GWHAAZE00000007exon5768236657682503-
GWHAAZE00000007exon5768353457683659-
GWHAAZE00000007exon5768392857684011-
GWHAAZE00000007exon5768496657685093-
GWHAAZE00000007exon5768715557687209-
GWHAAZE00000007exon5768731857687497-
GWHAAZE00000007exon5768759857687663-
GWHAAZE00000007CDS5768759857687663-
GWHAAZE00000007CDS5768731857687497-
GWHAAZE00000007CDS5768715557687209-
GWHAAZE00000007CDS5768496657685093-
GWHAAZE00000007CDS5768392857684011-
GWHAAZE00000007CDS5768353457683659-
GWHAAZE00000007CDS5768236657682503-
Transcript Sequence

Network for GWHGAAZE025225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00687.22Ribosomal_L1512408.60E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02863RP-L1, MRPL1, rplA Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf74.179
SRR3591706second leaf251.913
SRR3591707mature leaf276.734
SRR3591708Shoot apex160.638
SRR3591709Stem48.790
SRR3591710White floral bud44.199
SRR3591711White flower59.221
SRR3591712Green floral bud48.568
SRR3591713Yellow flower74.239
SRP173429 SRR8316895Juvenile bud stage 46.607
SRR8316896Juvenile bud stage 47.867
SRR8316897Juvenile bud stage 35.675
SRR8316894Third green stage 22.671
SRR8316900Third green stage 75.931
SRR8316901Third green stage 65.453
SRR8316898Complete white stage 24.975
SRR8316899Complete white stage 73.198
SRR8316903Complete white stage 35.141
SRR8316902Silver flowering stage20.703
SRR8316904Silver flowering stage29.033
SRR8316905Silver flowering stage14.885
SRR8316906Gold flowering stage 52.707
SRR8316907Gold flowering stage 45.838
SRR8316908Gold flowering stage 49.197
SRP132670SRR6706286Control58.230
SRR6706287Light intensity 50%52.807
SRR6706288Light intensity 20%61.753
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.793
CNS0095593Slightly white alabastrum(diploid) 225.403
CNS0095594Slightly white alabastrum(diploid) 327.717
CNS0095595Whole white alabastrum(diploid) 230.841
CNS0095596Whole white alabastrum(diploid) 328.853
CNS0095597Whole white alabastrum(diploid) 430.459
CNS0095598Silvery flower (diploied) 177.770
CNS0095599Silvery flower (diploied) 276.185
CNS0095600Silvery flower (diploied) 371.721
CNS0095601Golden flower (diploid) 173.292
CNS0095602Golden flower (diploid) 273.881
CNS0095603Golden flower (diploid) 373.583
CNS0095604Slightly white alabastrum(tetraploid) 137.404
CNS0095605Slightly white alabastrum(tetraploid) 228.402
CNS0095606Slightly white alabastrum(tetraploid) 357.377
CNS0095607Whole white alabastrum(tetraploid) 123.537
CNS0095608Whole white alabastrum(tetraploid) 222.094
CNS0095609Whole white alabastrum(tetraploid) 350.849
CNS0095610Silvery flower (tetraploid) 164.312
CNS0095611Silvery flower (tetraploid) 277.255
CNS0095612Silvery flower (tetraploid) 357.636
CNS0095613Golden flower (tetraploid) 155.695
CNS0095614Golden flower (tetraploid) 263.809
CNS0095615Golden flower (tetraploid) 358.863
CRA001975CRR073297Stem 179.501
CRR073298Stem 275.425
CRR073299Stem 381.370
CRR073300Leaf 150.971
CRR073301Leaf 251.935
CRR073302Leaf 347.470
CRR073303Juvenile bud 157.037
CRR073304Juvenile bud 238.203
CRR073305Juvenile bud 335.968
CRR073306Third green 114.393
CRR073307Third green 210.362
CRR073308Third green 315.663
CRR073309Second white 126.102
CRR073310Second white 231.216
CRR073311Second white 330.240
CRR073312Silver flowering 122.128
CRR073313Silver flowering 214.283
CRR073314Silver flowering 317.067
CRR073315Gold flowering 1347.317
CRR073316Gold flowering 2463.667
CRR073317Gold flowering 3212.766
CRR073318Tawny withering 150.461
CRR073319Tawny withering 250.569
CRR073320Tawny withering 352.865