Detail information of GWHGAAZE025217


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002313327.20transducin family protein [Populus trichocarpa]
Swissprottr|Q8L611|SC31B_ARATH0Protein transport protein SEC31 homolog B {ECO:0000305}
trEMBLtr|B9HNU7|B9HNU7_POPTR0Transducin family protein {ECO:0000313|EMBL:EEE87282.2}
TAIR10AT3G63460.10transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5754484557565336-
GWHAAZE00000007mRNA5754484557565336-
GWHAAZE00000007exon5756502057565336-
GWHAAZE00000007exon5756427057564324-
GWHAAZE00000007exon5756404457564166-
GWHAAZE00000007exon5755929257559388-
GWHAAZE00000007exon5755918157559217-
GWHAAZE00000007exon5755880257558907-
GWHAAZE00000007exon5755589657556015-
GWHAAZE00000007exon5755534557555387-
GWHAAZE00000007exon5755435657554465-
GWHAAZE00000007exon5755415757554284-
GWHAAZE00000007exon5755302857553598-
GWHAAZE00000007exon5755132057551505-
GWHAAZE00000007exon5755102857551241-
GWHAAZE00000007exon5754935457549469-
GWHAAZE00000007exon5754904757549229-
GWHAAZE00000007exon5754807857548203-
GWHAAZE00000007exon5754716257547444-
GWHAAZE00000007exon5754600557546420-
GWHAAZE00000007exon5754484557544934-
GWHAAZE00000007CDS5756502057565336-
GWHAAZE00000007CDS5756427057564324-
GWHAAZE00000007CDS5756404457564166-
GWHAAZE00000007CDS5755929257559388-
GWHAAZE00000007CDS5755918157559217-
GWHAAZE00000007CDS5755880257558907-
GWHAAZE00000007CDS5755589657556015-
GWHAAZE00000007CDS5755534557555387-
GWHAAZE00000007CDS5755435657554465-
GWHAAZE00000007CDS5755415757554284-
GWHAAZE00000007CDS5755302857553598-
GWHAAZE00000007CDS5755132057551505-
GWHAAZE00000007CDS5755102857551241-
GWHAAZE00000007CDS5754935457549469-
GWHAAZE00000007CDS5754904757549229-
GWHAAZE00000007CDS5754807857548203-
GWHAAZE00000007CDS5754716257547444-
GWHAAZE00000007CDS5754600557546420-
GWHAAZE00000007CDS5754484557544934-
Transcript Sequence

Network for GWHGAAZE025217

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14005SEC31 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf50.412
SRR3591706second leaf26.929
SRR3591707mature leaf24.169
SRR3591708Shoot apex28.509
SRR3591709Stem39.181
SRR3591710White floral bud36.224
SRR3591711White flower39.722
SRR3591712Green floral bud44.904
SRR3591713Yellow flower30.443
SRP173429 SRR8316895Juvenile bud stage 21.590
SRR8316896Juvenile bud stage 30.868
SRR8316897Juvenile bud stage 16.532
SRR8316894Third green stage 15.543
SRR8316900Third green stage 38.070
SRR8316901Third green stage 35.908
SRR8316898Complete white stage 8.764
SRR8316899Complete white stage 32.739
SRR8316903Complete white stage 23.848
SRR8316902Silver flowering stage8.945
SRR8316904Silver flowering stage16.769
SRR8316905Silver flowering stage8.105
SRR8316906Gold flowering stage 25.142
SRR8316907Gold flowering stage 23.103
SRR8316908Gold flowering stage 24.992
SRP132670SRR6706286Control25.052
SRR6706287Light intensity 50%26.502
SRR6706288Light intensity 20%27.629
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.909
CNS0095593Slightly white alabastrum(diploid) 222.029
CNS0095594Slightly white alabastrum(diploid) 319.446
CNS0095595Whole white alabastrum(diploid) 216.376
CNS0095596Whole white alabastrum(diploid) 317.387
CNS0095597Whole white alabastrum(diploid) 416.103
CNS0095598Silvery flower (diploied) 116.350
CNS0095599Silvery flower (diploied) 216.277
CNS0095600Silvery flower (diploied) 335.662
CNS0095601Golden flower (diploid) 113.289
CNS0095602Golden flower (diploid) 235.411
CNS0095603Golden flower (diploid) 334.292
CNS0095604Slightly white alabastrum(tetraploid) 123.367
CNS0095605Slightly white alabastrum(tetraploid) 219.712
CNS0095606Slightly white alabastrum(tetraploid) 346.646
CNS0095607Whole white alabastrum(tetraploid) 115.021
CNS0095608Whole white alabastrum(tetraploid) 211.494
CNS0095609Whole white alabastrum(tetraploid) 333.516
CNS0095610Silvery flower (tetraploid) 131.534
CNS0095611Silvery flower (tetraploid) 233.616
CNS0095612Silvery flower (tetraploid) 324.360
CNS0095613Golden flower (tetraploid) 114.667
CNS0095614Golden flower (tetraploid) 226.386
CNS0095615Golden flower (tetraploid) 323.643
CRA001975CRR073297Stem 132.532
CRR073298Stem 230.898
CRR073299Stem 322.116
CRR073300Leaf 137.717
CRR073301Leaf 234.197
CRR073302Leaf 322.540
CRR073303Juvenile bud 125.896
CRR073304Juvenile bud 218.549
CRR073305Juvenile bud 339.682
CRR073306Third green 18.817
CRR073307Third green 29.430
CRR073308Third green 311.682
CRR073309Second white 110.524
CRR073310Second white 214.325
CRR073311Second white 313.305
CRR073312Silver flowering 113.318
CRR073313Silver flowering 217.453
CRR073314Silver flowering 314.912
CRR073315Gold flowering 16.052
CRR073316Gold flowering 213.575
CRR073317Gold flowering 36.407
CRR073318Tawny withering 120.795
CRR073319Tawny withering 218.403
CRR073320Tawny withering 321.464