Gene detail

Detail information of GWHGAAZE025200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278849.1	6.85856E-82	PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]
Swissprot	tr\|Q9LXV5\|NFYA1_ARATH	3E-33	Nuclear transcription factor Y subunit A-1
trEMBL	tr\|D7T311\|D7T311_VITVI	3E-81	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24892.3}
TAIR10	AT5G12840.4	2E-24	nuclear factor Y, subunit A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57159559	57166706	+
GWHAAZE00000007	mRNA	57159559	57166706	+
GWHAAZE00000007	exon	57159559	57159745	+
GWHAAZE00000007	exon	57160929	57161081	+
GWHAAZE00000007	exon	57162306	57162424	+
GWHAAZE00000007	exon	57162609	57162671	+
GWHAAZE00000007	exon	57163673	57163837	+
GWHAAZE00000007	exon	57164887	57164939	+
GWHAAZE00000007	exon	57165647	57165749	+
GWHAAZE00000007	exon	57166377	57166706	+
GWHAAZE00000007	CDS	57159559	57159745	+
GWHAAZE00000007	CDS	57160929	57161081	+
GWHAAZE00000007	CDS	57162306	57162424	+
GWHAAZE00000007	CDS	57162609	57162671	+
GWHAAZE00000007	CDS	57163673	57163837	+
GWHAAZE00000007	CDS	57164887	57164939	+
GWHAAZE00000007	CDS	57165647	57165749	+
GWHAAZE00000007	CDS	57166377	57166706	+

Transcript Sequence
>GWHTAAZE025234 ATGCCCACAAAAACTAAAGATGAAGATCGGCAGCAAGACATGAGAGCACATAGTATTTCAGCATCGACAGTGTACTCACAGCCTTGGTGGCATGGTGTTGGGAACGATGCCATTTCTTCTTCAGTGGAATACTTAAACAGAGACAATCTTATTAAGGAAACTCATATGGCTTCAGCCCCACAATCTGGCTTATTGAGGATGAGGAAAGGTGGGGAGCTTTGCGCAGAGCTTTTTGGTGTGAAGATGTGGGATGATAAATGTGTGGCATTGGTGGAGATTTTGACATGGGGTTGCGTGAGGATCAATGTTCCAAAATCCAAGCCTTGGGCTTCCTTGCCTAGATTAAAGGGACATAATGGTCAAGAACACCATCCTAAGCATGTTGCATCAGCAACACATCCTGCTATGGGTGAACATTTCGAATCAACTTCTCAAATGGAACTTGTCGGTCACTCAATCATGTTGACTTCATACCCATATCAGGATCCACATTATGGGGGATTAATGACTTATGGGGCTCAGGTGCATCCTCACTTATTGGGAATCCATCAAACTCGAAGGCCGTTGCCCCTTGAAATGGAAGAGGAGCCTGTATATGTGAATGCAAAGCAATATCATGGAATTTTAAGACGAAGGCAATCACGTGCCAAGGCAGAGCTGGAGAAGAAAGTGATAAAATCCAGAAAGGACAAGGGCATTGGGATTGAGGAATTTGGTGCCTTAAAACATCTCTTTAGTAGCTTCTTTCTTGTGCCTTACTGGATTTGGCTGGAAAATGAAAAGGATTCTAGGAGAATCTTTCTAGGTTGGGAAATTCCTTCCATCTGCTGTGAACAGAGAGTGCCATATCTGCATGAATCTCGACATCAGCATGCAATGAGAAGGGCAAGGGGTTGCGGGGGCCGTTTTCTCAACACAAAGAAGTCCGATAACAATAACGCCTCAAATCCTAGATCGGACGAGCCAAAATCCAGCATAACTATTTCAACTCAATCTGTCAACTCATCGGGATCTGAGCACTTTTCTACTAGCTGTGATGTAGACTCTGATCAGAAAGATGAGAAGGGAGGCCCGGCTTATGAAGAAAATGGATCATCACTGTACAATTTTCAGTCGAACCGCAATGGGGGAGGAGACTCCCGGGCCCAGCACGGGTCAGCCCGCAACAAGTGA

Network for GWHGAAZE025200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02045.16	CBFB_NFYA	196	229	7.10E-11
PF02045.16	CBFB_NFYA	278	303	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	pathway	mapID
K08064	NFYA, HAP2	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0016602	cellular_component	CCAAT-binding factor complex
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.388
	SRR3591706	second leaf	18.679
	SRR3591707	mature leaf	44.176
	SRR3591708	Shoot apex	17.078
	SRR3591709	Stem	38.349
	SRR3591710	White floral bud	21.168
	SRR3591711	White flower	36.023
	SRR3591712	Green floral bud	13.984
	SRR3591713	Yellow flower	39.246
SRP173429	SRR8316895	Juvenile bud stage	14.814
	SRR8316896	Juvenile bud stage	19.220
	SRR8316897	Juvenile bud stage	7.139
	SRR8316894	Third green stage	6.211
	SRR8316900	Third green stage	13.466
	SRR8316901	Third green stage	15.595
	SRR8316898	Complete white stage	7.632
	SRR8316899	Complete white stage	33.144
	SRR8316903	Complete white stage	16.815
	SRR8316902	Silver flowering stage	14.826
	SRR8316904	Silver flowering stage	16.533
	SRR8316905	Silver flowering stage	8.104
	SRR8316906	Gold flowering stage	32.180
	SRR8316907	Gold flowering stage	30.247
	SRR8316908	Gold flowering stage	27.538
SRP132670	SRR6706286	Control	26.665
	SRR6706287	Light intensity 50%	26.701
	SRR6706288	Light intensity 20%	26.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.473
	CNS0095593	Slightly white alabastrum(diploid) 2	10.057
	CNS0095594	Slightly white alabastrum(diploid) 3	11.488
	CNS0095595	Whole white alabastrum(diploid) 2	10.229
	CNS0095596	Whole white alabastrum(diploid) 3	7.525
	CNS0095597	Whole white alabastrum(diploid) 4	9.035
	CNS0095598	Silvery flower (diploied) 1	32.733
	CNS0095599	Silvery flower (diploied) 2	22.848
	CNS0095600	Silvery flower (diploied) 3	19.190
	CNS0095601	Golden flower (diploid) 1	30.095
	CNS0095602	Golden flower (diploid) 2	31.817
	CNS0095603	Golden flower (diploid) 3	30.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.117
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.979
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.999
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.860
	CNS0095610	Silvery flower (tetraploid) 1	25.025
	CNS0095611	Silvery flower (tetraploid) 2	24.312
	CNS0095612	Silvery flower (tetraploid) 3	15.767
	CNS0095613	Golden flower (tetraploid) 1	26.421
	CNS0095614	Golden flower (tetraploid) 2	31.308
	CNS0095615	Golden flower (tetraploid) 3	21.752
CRA001975	CRR073297	Stem 1	17.467
	CRR073298	Stem 2	15.435
	CRR073299	Stem 3	11.565
	CRR073300	Leaf 1	15.173
	CRR073301	Leaf 2	15.347
	CRR073302	Leaf 3	9.440
	CRR073303	Juvenile bud 1	12.053
	CRR073304	Juvenile bud 2	6.439
	CRR073305	Juvenile bud 3	12.515
	CRR073306	Third green 1	11.092
	CRR073307	Third green 2	10.124
	CRR073308	Third green 3	11.246
	CRR073309	Second white 1	13.419
	CRR073310	Second white 2	15.099
	CRR073311	Second white 3	13.456
	CRR073312	Silver flowering 1	11.146
	CRR073313	Silver flowering 2	10.641
	CRR073314	Silver flowering 3	10.440
	CRR073315	Gold flowering 1	13.367
	CRR073316	Gold flowering 2	21.257
	CRR073317	Gold flowering 3	9.611
	CRR073318	Tawny withering 1	15.764
	CRR073319	Tawny withering 2	19.600
	CRR073320	Tawny withering 3	14.138