Gene detail

Detail information of GWHGAAZE025198

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07776.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P93755\|C3H30_ARATH	Zinc finger CCCH domain-containing protein 30
trEMBL	tr\|A0A068UH58\|A0A068UH58_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313\|EMBL:CDP07776.1}
TAIR10	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57073022	57075121	-
GWHAAZE00000007	mRNA	57073022	57075121	-
GWHAAZE00000007	exon	57074632	57075121	-
GWHAAZE00000007	exon	57073929	57074580	-
GWHAAZE00000007	exon	57073409	57073889	-
GWHAAZE00000007	exon	57073022	57073354	-
GWHAAZE00000007	CDS	57074632	57075121	-
GWHAAZE00000007	CDS	57073929	57074580	-
GWHAAZE00000007	CDS	57073409	57073889	-
GWHAAZE00000007	CDS	57073022	57073354	-

Transcript Sequence
>GWHTAAZE025232 ATGAATCAACTAACTGTTGAGACCGAAGATTCTTTTTCCAGTTTGCTTGAACTTGCTGCTAACAACGATGTCAATGGTTTTAACCGTTCCATTGAGATAGATGCCTCTGCTATTGATGAGGTTGGACTTTGGTATGTCCGAAAAAAAGGCTCGAAACAAATCACTAACGAGTATAGAACTCCATTAATGGTTGCTGCTACATATGGTAGTATAGATGTTATGAAAATCATTCTTTCTCGGCCTGAAGTTGATGTGAATCGCTCTTGTGGGAAGGATAAATGCACTGCCCTTCACTCTGCCGCCTCTGGTGGCTCTGTTGATGCTGTTGATGTTGTTAAGCTGCTTCTATCGGTTGGTGCTGACCCAAATATTGAGGATGCCAATGGTCAAAGGGCGGTTGACGTCATTGTCACTCCTCCAAAACTACCTGCCATTAGAGCTTCTATAGAAGAACTGCTAATTAGCAATAGTTCTTCTGATGGTTCAATTGCCACCCTATCTTCATCCCCAGAGAACGGTTCGCCATGTTCCCCATCTGATTTAGTTTCGTCTCCGATGATGTCAAAGTTTATTGACCTTCCTTCAAATTCCGCATTAGAGAAGAAAGAATACCCGATTGACCCTTCTCTCCCCGACATAAAGAACAGCATATATTCAACTGACGAGTTCCGCATGTTCTCGTTCAAGGTCAGGCCTTGTTCGAGGGCGTATTCTCATGATTGGACTGAGTGCCCTTTTGTTCACCCGGGGGAGAATGCTCGCAGAAGGGACCCAAGAAAGTACCACTATAGCTGTGTACCGTGCCCTGATTTTCGAAAGGGTGCTTGTAGGCGAGGGGATATGTGTGAGTACGCTCATGGCGTGTTTGAGTGTTGGCTACACCCAGCTCAGTATCGCACTCGCCTTTGCAAAGATGGTACTAACTGTGCTAGGCGGGTTTGCTTTTTCGCCCATAAGACCGACGAGCTACGGCCCTTGTTTGTCTCCACAGGGTCAGCCGTTCCGTCCCCACGGTCCAACGCTGCTAGTGCCATGGACATGGCCGCCGCTTTGAGCCTTTTGCCAGGTTCACCGTCATCGAGTCCTGCTTTTAACCAACCAATGTCTCCTTCAGCTAATGGGGGCCCACACTCGTCTATGGCGAGTAACCTCCAGTCAAGTCGGTTGAGATCTTCCCTTAATGCCCGAGACCTTCCGCCTGAGGATTTAAATATGTTGCAAGATTTTGATGCGCAACTTCTAACCGATTTGGCCAGTTTCTCACATTCCAGGCCTAATTCGGTTAACTCGCTTTCGTTTAACCGATCGGGTCGGTCCAAAAATCTGACTCCTTCAAATCTTGATGAGTTATTCTCAGCCGAGATCTCCTCTTCTCCCCGGTACTCTGATCAGGGGGGAGGTGTTTTTTCTCCGTCTCAAAAATCCGCTATTCTCAACCAGTTCCAACAGCAACAGAGCGTGCTATCCCCAGTCAACACTAATGTCTTCTCCCCGAAAAATGCTGACCGCCCTCTGTTTCAGGCTTCCTATGGTGGATCCTCACCCCGGGGGTTAATGTCTCCAAGAAGCATGGACACGAGTTCCCCCATGAGCTCCAGGCTTTGCCCCTTCACACAGCGCGAGATTGTTGGGTCGCCTGTGGATTCTTGGTCAAAATGGCCTACTCCAAACGGGAATGGTAAAGTAGATTGGTCCGTTAACGGAGATGAACGCATTCAATTGCAGAAATCATGTTCGTTCGGCTTAAACAAGAATGGAGAAGAGCCCGATCTATCGTGGGTTCAATCTCTTGTGAAGGAATCTCCACCAGAGATGAAGGAAAAATTCGCTGCCTCAGTTTCCGGCGGTGCACCATCCGGTGAGAATATCAACTCGAATTCTCAGATTGAATCCATTGATCATTCAGTTTTAGGAGCTTGGCTTGAGCAGATGCAACTTGATCAGCTTGTGGCCTAA

Network for GWHGAAZE025198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	57	126	9.00E-10
PF00642.25	zf-CCCH	267	287	6.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	90.010
	SRR3591706	second leaf	41.195
	SRR3591707	mature leaf	66.040
	SRR3591708	Shoot apex	70.492
	SRR3591709	Stem	126.433
	SRR3591710	White floral bud	75.569
	SRR3591711	White flower	97.844
	SRR3591712	Green floral bud	69.436
	SRR3591713	Yellow flower	40.964
SRP173429	SRR8316895	Juvenile bud stage	15.134
	SRR8316896	Juvenile bud stage	16.171
	SRR8316897	Juvenile bud stage	7.074
	SRR8316894	Third green stage	22.006
	SRR8316900	Third green stage	60.203
	SRR8316901	Third green stage	42.261
	SRR8316898	Complete white stage	21.724
	SRR8316899	Complete white stage	105.732
	SRR8316903	Complete white stage	50.190
	SRR8316902	Silver flowering stage	23.458
	SRR8316904	Silver flowering stage	33.508
	SRR8316905	Silver flowering stage	11.197
	SRR8316906	Gold flowering stage	30.097
	SRR8316907	Gold flowering stage	39.444
	SRR8316908	Gold flowering stage	37.444
SRP132670	SRR6706286	Control	68.726
	SRR6706287	Light intensity 50%	63.626
	SRR6706288	Light intensity 20%	66.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.459
	CNS0095593	Slightly white alabastrum(diploid) 2	37.585
	CNS0095594	Slightly white alabastrum(diploid) 3	19.436
	CNS0095595	Whole white alabastrum(diploid) 2	26.161
	CNS0095596	Whole white alabastrum(diploid) 3	21.777
	CNS0095597	Whole white alabastrum(diploid) 4	25.235
	CNS0095598	Silvery flower (diploied) 1	48.476
	CNS0095599	Silvery flower (diploied) 2	21.673
	CNS0095600	Silvery flower (diploied) 3	49.600
	CNS0095601	Golden flower (diploid) 1	26.966
	CNS0095602	Golden flower (diploid) 2	52.233
	CNS0095603	Golden flower (diploid) 3	47.309
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.480
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.847
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.377
	CNS0095610	Silvery flower (tetraploid) 1	56.116
	CNS0095611	Silvery flower (tetraploid) 2	44.874
	CNS0095612	Silvery flower (tetraploid) 3	58.755
	CNS0095613	Golden flower (tetraploid) 1	29.040
	CNS0095614	Golden flower (tetraploid) 2	67.666
	CNS0095615	Golden flower (tetraploid) 3	51.948
CRA001975	CRR073297	Stem 1	143.803
	CRR073298	Stem 2	137.377
	CRR073299	Stem 3	143.775
	CRR073300	Leaf 1	198.256
	CRR073301	Leaf 2	178.848
	CRR073302	Leaf 3	159.860
	CRR073303	Juvenile bud 1	206.727
	CRR073304	Juvenile bud 2	135.503
	CRR073305	Juvenile bud 3	292.854
	CRR073306	Third green 1	108.568
	CRR073307	Third green 2	104.697
	CRR073308	Third green 3	120.684
	CRR073309	Second white 1	95.035
	CRR073310	Second white 2	49.379
	CRR073311	Second white 3	78.864
	CRR073312	Silver flowering 1	101.944
	CRR073313	Silver flowering 2	89.852
	CRR073314	Silver flowering 3	105.156
	CRR073315	Gold flowering 1	39.371
	CRR073316	Gold flowering 2	56.932
	CRR073317	Gold flowering 3	64.749
	CRR073318	Tawny withering 1	168.674
	CRR073319	Tawny withering 2	123.097
	CRR073320	Tawny withering 3	120.050