Gene detail

Detail information of GWHGAAZE025190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP43461.1	1.3145E-130	hypothetical protein JCGZ_16748 [Jatropha curcas]
Swissprot	tr\|Q6IDS6\|C3H35_ARATH	7E-107	E3 ubiquitin-protein ligase makorin
trEMBL	tr\|A0A067L4R4\|A0A067L4R4_JATCU	5E-131	Uncharacterized protein {ECO:0000313\|EMBL:KDP43461.1}
TAIR10	AT3G08505.2	1E-84	zinc finger (CCCH-type/C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56971275	56975923	-
GWHAAZE00000007	mRNA	56971275	56975923	-
GWHAAZE00000007	exon	56975882	56975923	-
GWHAAZE00000007	exon	56974342	56974967	-
GWHAAZE00000007	exon	56973655	56973724	-
GWHAAZE00000007	exon	56971275	56971589	-
GWHAAZE00000007	CDS	56975882	56975923	-
GWHAAZE00000007	CDS	56974342	56974967	-
GWHAAZE00000007	CDS	56973655	56973724	-
GWHAAZE00000007	CDS	56971275	56971589	-

Transcript Sequence
>GWHTAAZE025224 ATGCTAGAGAATCAAGATATGCAATTTATGTATCCACTTCCGGTTTGCAAATTCTACCAAAAAGGATTTTGCTCTTATGGAAGCCGATGTAGATACGAACACGTTCCAATTTCTCAGTCACATTTATCTACTCCATCTTCCTCAGCACCCACTCTTTCTGCTTCGAGCACACCCTTCTTTCCTCCCACAAAACCAGCTGAACGCACTCTCTGTTCTTTTGGTGCAACTGGAATTTGTCCGCATGGTAAAAAATGCCCTTATATACATGGAGATTTATGTTCCACCTGCGGAAAATATTGCTTGCATCCTTTTAGTCCCAAGGAAGTAGAAGAGCATATAAAAGCATGTGAGAAGCAAAAAAATCGCCTCGAGGTTTTAAAACGTAGCCGAGAAATTGAATGTGGTGTTTGTCTTGAAAGAGTTCTTTCGAAACCCACTGCAGCTGAGAGGAAATTTGGATTGTTATCTGAATGTGATCATCCATTTTGCATATCATGTATTAGGAATTGGCGGAGTACATCCCCAACCATTGGGATGGACTTGAATTCTTCTTTGAGGGCGTGCCCGTTGTGCCGGAAGCTTTCATATTTCGTCATTCCTAGTGTTATTTGGTACTGCACAAAAGAAGAAAAGCAAGAAATTATCGATAGCTACAAATCGAAACTCAGGTCAATTGATTGCAAGCATTTTGACTTTGGAAATGGAACATGCCCATTTGGAACTAGTTGTTTCTACAAGCACACGGTCGAGCCAGGCTCATACCTGTGGAACTCTACTCTCGGGCTGGAAAACGATGGTCCCACCATTTTTGATACCGACGAAACTGACACATTATACAGTGCAGATGAGTTGGATATGGACGGTTTACACGTTTTGTTTGAACACTTGTACCGTCCACATACACCACTAGAAGATGAACAAGAAGTGGAGAATCAAAGTGCTGATGAACTGGACGAAGAACTTTCACTGGCGGAGGCAATGGCTTTTCTACTAATGCAGCCAGGTTTTGATGAGTGTGATTTATCAAGTGATGATGATATTTATATCCCTTGA

Network for GWHGAAZE025190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18044.2	zf-CCCH_4	14	34	6.60E-07
PF00642.25	zf-CCCH	68	90	0.00015
PF13639.7	zf-RING_2	133	192	7.20E-07
PF14608.7	zf-CCCH_2	226	247	0.027

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.426
	SRR3591706	second leaf	20.335
	SRR3591707	mature leaf	28.683
	SRR3591708	Shoot apex	20.760
	SRR3591709	Stem	41.577
	SRR3591710	White floral bud	42.138
	SRR3591711	White flower	41.622
	SRR3591712	Green floral bud	21.846
	SRR3591713	Yellow flower	37.102
SRP173429	SRR8316895	Juvenile bud stage	23.189
	SRR8316896	Juvenile bud stage	28.389
	SRR8316897	Juvenile bud stage	19.391
	SRR8316894	Third green stage	10.668
	SRR8316900	Third green stage	32.505
	SRR8316901	Third green stage	36.123
	SRR8316898	Complete white stage	27.673
	SRR8316899	Complete white stage	59.654
	SRR8316903	Complete white stage	51.333
	SRR8316902	Silver flowering stage	29.043
	SRR8316904	Silver flowering stage	41.006
	SRR8316905	Silver flowering stage	16.050
	SRR8316906	Gold flowering stage	43.057
	SRR8316907	Gold flowering stage	40.504
	SRR8316908	Gold flowering stage	44.463
SRP132670	SRR6706286	Control	30.013
	SRR6706287	Light intensity 50%	29.631
	SRR6706288	Light intensity 20%	30.458
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.416
	CNS0095593	Slightly white alabastrum(diploid) 2	22.607
	CNS0095594	Slightly white alabastrum(diploid) 3	14.912
	CNS0095595	Whole white alabastrum(diploid) 2	17.758
	CNS0095596	Whole white alabastrum(diploid) 3	13.752
	CNS0095597	Whole white alabastrum(diploid) 4	16.632
	CNS0095598	Silvery flower (diploied) 1	41.449
	CNS0095599	Silvery flower (diploied) 2	35.106
	CNS0095600	Silvery flower (diploied) 3	42.619
	CNS0095601	Golden flower (diploid) 1	26.339
	CNS0095602	Golden flower (diploid) 2	36.512
	CNS0095603	Golden flower (diploid) 3	34.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.101
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.831
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.641
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.280
	CNS0095610	Silvery flower (tetraploid) 1	46.196
	CNS0095611	Silvery flower (tetraploid) 2	41.019
	CNS0095612	Silvery flower (tetraploid) 3	42.403
	CNS0095613	Golden flower (tetraploid) 1	35.034
	CNS0095614	Golden flower (tetraploid) 2	37.875
	CNS0095615	Golden flower (tetraploid) 3	51.029
CRA001975	CRR073297	Stem 1	25.373
	CRR073298	Stem 2	19.432
	CRR073299	Stem 3	11.310
	CRR073300	Leaf 1	18.608
	CRR073301	Leaf 2	27.368
	CRR073302	Leaf 3	14.986
	CRR073303	Juvenile bud 1	16.967
	CRR073304	Juvenile bud 2	12.960
	CRR073305	Juvenile bud 3	17.538
	CRR073306	Third green 1	15.584
	CRR073307	Third green 2	14.586
	CRR073308	Third green 3	13.498
	CRR073309	Second white 1	11.837
	CRR073310	Second white 2	18.387
	CRR073311	Second white 3	14.549
	CRR073312	Silver flowering 1	12.036
	CRR073313	Silver flowering 2	8.162
	CRR073314	Silver flowering 3	13.798
	CRR073315	Gold flowering 1	9.301
	CRR073316	Gold flowering 2	17.765
	CRR073317	Gold flowering 3	8.026
	CRR073318	Tawny withering 1	18.838
	CRR073319	Tawny withering 2	19.612
	CRR073320	Tawny withering 3	17.847