Detail information of GWHGAAZE025183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010928849.11.1042E-138PREDICTED: ras-related protein RGP1 [Elaeis guineensis]
COGYP_008431664.12E-25hypothetical protein N186_01315
Swissprottr|Q9LH50|RAA4D_ARATH1E-130Ras-related protein RABA4d
trEMBLtr|D7T2X5|D7T2X5_VITVI3E-136Putative uncharacterized protein {ECO:0000313|EMBL:CBI24856.3}
TAIR10AT3G12160.12E-103RAB GTPase homolog A4D

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5681424456819156-
GWHAAZE00000007mRNA5681424456819156-
GWHAAZE00000007exon5681424456814451-
GWHAAZE00000007exon5681607056816549-
GWHAAZE00000007exon5681893056819156-
GWHAAZE00000007CDS5681893056819156-
GWHAAZE00000007CDS5681609956816549-
GWHAAZE00000007three_prime_UTR5681607056816098-
GWHAAZE00000007three_prime_UTR5681424456814451-
Transcript Sequence

Network for GWHGAAZE025183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras171778.80E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.404
SRR3591706second leaf0.000
SRR3591707mature leaf0.522
SRR3591708Shoot apex0.232
SRR3591709Stem2.958
SRR3591710White floral bud1.132
SRR3591711White flower0.731
SRR3591712Green floral bud9.406
SRR3591713Yellow flower0.807
SRP173429 SRR8316895Juvenile bud stage 0.354
SRR8316896Juvenile bud stage 1.942
SRR8316897Juvenile bud stage 2.454
SRR8316894Third green stage 2.172
SRR8316900Third green stage 9.435
SRR8316901Third green stage 11.268
SRR8316898Complete white stage 0.070
SRR8316899Complete white stage 0.532
SRR8316903Complete white stage 0.003
SRR8316902Silver flowering stage0.285
SRR8316904Silver flowering stage0.162
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.178
SRR8316907Gold flowering stage 0.485
SRR8316908Gold flowering stage 1.469
SRP132670SRR6706286Control4.866
SRR6706287Light intensity 50%4.463
SRR6706288Light intensity 20%3.190
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.791
CNS0095593Slightly white alabastrum(diploid) 26.658
CNS0095594Slightly white alabastrum(diploid) 310.841
CNS0095595Whole white alabastrum(diploid) 213.316
CNS0095596Whole white alabastrum(diploid) 317.480
CNS0095597Whole white alabastrum(diploid) 416.439
CNS0095598Silvery flower (diploied) 10.877
CNS0095599Silvery flower (diploied) 20.513
CNS0095600Silvery flower (diploied) 30.511
CNS0095601Golden flower (diploid) 10.008
CNS0095602Golden flower (diploid) 20.156
CNS0095603Golden flower (diploid) 30.215
CNS0095604Slightly white alabastrum(tetraploid) 115.517
CNS0095605Slightly white alabastrum(tetraploid) 215.038
CNS0095606Slightly white alabastrum(tetraploid) 32.699
CNS0095607Whole white alabastrum(tetraploid) 116.272
CNS0095608Whole white alabastrum(tetraploid) 218.739
CNS0095609Whole white alabastrum(tetraploid) 312.922
CNS0095610Silvery flower (tetraploid) 14.124
CNS0095611Silvery flower (tetraploid) 24.180
CNS0095612Silvery flower (tetraploid) 32.596
CNS0095613Golden flower (tetraploid) 12.425
CNS0095614Golden flower (tetraploid) 24.940
CNS0095615Golden flower (tetraploid) 32.851
CRA001975CRR073297Stem 11.071
CRR073298Stem 22.022
CRR073299Stem 30.461
CRR073300Leaf 15.388
CRR073301Leaf 23.658
CRR073302Leaf 33.336
CRR073303Juvenile bud 13.576
CRR073304Juvenile bud 21.050
CRR073305Juvenile bud 31.497
CRR073306Third green 10.345
CRR073307Third green 20.792
CRR073308Third green 30.319
CRR073309Second white 10.002
CRR073310Second white 20.055
CRR073311Second white 30.058
CRR073312Silver flowering 10.333
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.295
CRR073316Gold flowering 20.190
CRR073317Gold flowering 30.369
CRR073318Tawny withering 11.946
CRR073319Tawny withering 21.575
CRR073320Tawny withering 34.648