Gene detail

Detail information of GWHGAAZE025178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHM22935.1	0	siroheme synthase [Nicotiana tabacum]
COG	YP_422726.1	4E-79	uroporphyrinogen-III methylase
Swissprot	tr\|O19889\|SUMT_CYACA	6E-52	Uroporphyrinogen-III C-methyltransferase
trEMBL	tr\|W8SGE9\|W8SGE9_TOBAC	0	Siroheme synthase {ECO:0000313\|EMBL:AHM22935.1}
TAIR10	AT5G40850.1	9E-139	urophorphyrin methylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56699035	56705010	-
GWHAAZE00000007	mRNA	56699035	56705010	-
GWHAAZE00000007	exon	56699035	56699187	-
GWHAAZE00000007	exon	56699779	56700056	-
GWHAAZE00000007	exon	56701272	56701341	-
GWHAAZE00000007	exon	56701440	56701517	-
GWHAAZE00000007	exon	56704480	56705010	-
GWHAAZE00000007	CDS	56704480	56705010	-
GWHAAZE00000007	CDS	56701440	56701517	-
GWHAAZE00000007	CDS	56701272	56701341	-
GWHAAZE00000007	CDS	56699779	56700056	-
GWHAAZE00000007	CDS	56699035	56699187	-

Transcript Sequence
>GWHTAAZE025212 ATGGCTTTCCTAAGTAAACTCCCTTCTCTCCATTCTTCTAATTTCTCTCCGTCTTCTTCAAAACCCCAATTCACAAAACCCACAAACCCATTCAATCAAATCCATTGCAACTCATCACCCTTCACCGAAAAACACTCAATCCAACGCTACCAAAGAGAAACTTGGGTCTCCAACAAAACCCAATTGGACAAGTTTCAATCTTGCCAGGTCCCGCGAAATTCGGCCTCAATTAGGGATTTTGACATAGCCCTTCAGTTGCCGGAGCTAAAGAAGCTTCTTCAAGTACTGAGGGAGAAGAGAGAGAGTGGAAATGGCGACGGAGGAGGAGAGAGAAAGGTTGGGGAGGTTTATTTGGTGGGGACAGGACCAGGGGATCCTGAATTGTTGACAGTAAAGGCTATGAGGGTGATTGAAAGGGCTGATTTGTTGTTGTATGATAGGTTGGTTTCTAATGATGTGTTGGATTTGGTGGGTGAAGGTGCTAGGTTGTTGTATGTTGGGAAAACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATTCATGAATTACTGTTGAGTTTTGCTGAAGCTGGTGCCACAGTCGTAAGGCTTAAAGGAGGGGATCCGCTGGTATTCGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAGCAACAAGGGATTCAAGTGAAAGTTATTCCGGGTATAACCGCTGCCTCGGGAATAGCAGCAGAACTTGGGATTCCATTGACTCACCGTGGGGTTGCCAATAGTGTTAGATTTCTGACAGGGCACTCAAGGAAAGGAGGAACGGATCCACTGTTTGTGGCAGAGAATGCAGCGGACCCCGATTCGACTCTAGTTGTTTATATGGGCTTGGCCACTCTCCCTTCTCTAGTCCTTAAATTGATCCACCATGGTTTGCCTCCCGATACCCCAGCTGCCGCCATTGAGCGCGGGACCACACCTCAACAACGCATTGTATTTGCGGAACTCGAGGATCTTGCTGACAAAATTACATCGACACAATTAATTTCGCCAACTCTAATCATCATTGGTAAGGTAGTTGCTCTTTCGCCTTTGTGGCCACATTCATGTAATGATGCTACCCCAGTTCTAGTGGAGGCCGAATAG

Network for GWHGAAZE025178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00590.21	TP_methylase	116	328	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02303	cobA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0019354	biological_process	siroheme biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.681
	SRR3591706	second leaf	17.839
	SRR3591707	mature leaf	32.683
	SRR3591708	Shoot apex	12.043
	SRR3591709	Stem	13.480
	SRR3591710	White floral bud	6.306
	SRR3591711	White flower	15.126
	SRR3591712	Green floral bud	6.387
	SRR3591713	Yellow flower	8.714
SRP173429	SRR8316895	Juvenile bud stage	7.949
	SRR8316896	Juvenile bud stage	9.218
	SRR8316897	Juvenile bud stage	4.019
	SRR8316894	Third green stage	2.769
	SRR8316900	Third green stage	7.448
	SRR8316901	Third green stage	6.493
	SRR8316898	Complete white stage	2.149
	SRR8316899	Complete white stage	9.467
	SRR8316903	Complete white stage	4.834
	SRR8316902	Silver flowering stage	7.315
	SRR8316904	Silver flowering stage	5.612
	SRR8316905	Silver flowering stage	3.823
	SRR8316906	Gold flowering stage	8.063
	SRR8316907	Gold flowering stage	9.018
	SRR8316908	Gold flowering stage	12.402
SRP132670	SRR6706286	Control	15.582
	SRR6706287	Light intensity 50%	18.626
	SRR6706288	Light intensity 20%	14.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.640
	CNS0095593	Slightly white alabastrum(diploid) 2	9.845
	CNS0095594	Slightly white alabastrum(diploid) 3	7.514
	CNS0095595	Whole white alabastrum(diploid) 2	6.223
	CNS0095596	Whole white alabastrum(diploid) 3	3.522
	CNS0095597	Whole white alabastrum(diploid) 4	3.441
	CNS0095598	Silvery flower (diploied) 1	22.162
	CNS0095599	Silvery flower (diploied) 2	13.962
	CNS0095600	Silvery flower (diploied) 3	10.998
	CNS0095601	Golden flower (diploid) 1	7.059
	CNS0095602	Golden flower (diploid) 2	10.405
	CNS0095603	Golden flower (diploid) 3	10.769
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.580
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.102
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.704
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.547
	CNS0095610	Silvery flower (tetraploid) 1	11.617
	CNS0095611	Silvery flower (tetraploid) 2	7.719
	CNS0095612	Silvery flower (tetraploid) 3	8.570
	CNS0095613	Golden flower (tetraploid) 1	5.528
	CNS0095614	Golden flower (tetraploid) 2	10.523
	CNS0095615	Golden flower (tetraploid) 3	7.749
CRA001975	CRR073297	Stem 1	11.310
	CRR073298	Stem 2	10.432
	CRR073299	Stem 3	9.499
	CRR073300	Leaf 1	7.529
	CRR073301	Leaf 2	6.269
	CRR073302	Leaf 3	5.929
	CRR073303	Juvenile bud 1	4.322
	CRR073304	Juvenile bud 2	4.286
	CRR073305	Juvenile bud 3	7.556
	CRR073306	Third green 1	4.042
	CRR073307	Third green 2	6.870
	CRR073308	Third green 3	6.156
	CRR073309	Second white 1	4.795
	CRR073310	Second white 2	7.000
	CRR073311	Second white 3	6.588
	CRR073312	Silver flowering 1	6.543
	CRR073313	Silver flowering 2	5.263
	CRR073314	Silver flowering 3	4.140
	CRR073315	Gold flowering 1	5.128
	CRR073316	Gold flowering 2	4.744
	CRR073317	Gold flowering 3	4.120
	CRR073318	Tawny withering 1	11.637
	CRR073319	Tawny withering 2	10.587
	CRR073320	Tawny withering 3	9.308