Gene detail

Detail information of GWHGAAZE025167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006359171.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0280111-like [Solanum tuberosum]
COG	YP_005370070.1	9E-19	putative serine/threonine protein kinase
Swissprot	tr\|Q5Z6X0\|CIPKP_ORYSJ	6E-22	CBL-interacting protein kinase 25
trEMBL	tr\|M1A7A3\|M1A7A3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400016206}
TAIR10	AT2G32850.2	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56496756	56502160	+
GWHAAZE00000007	mRNA	56496756	56502160	+
GWHAAZE00000007	exon	56496756	56497219	+
GWHAAZE00000007	exon	56498228	56498393	+
GWHAAZE00000007	exon	56498485	56498535	+
GWHAAZE00000007	exon	56499050	56499275	+
GWHAAZE00000007	exon	56499378	56499464	+
GWHAAZE00000007	exon	56500410	56500987	+
GWHAAZE00000007	exon	56501795	56502160	+
GWHAAZE00000007	CDS	56496756	56497219	+
GWHAAZE00000007	CDS	56498228	56498393	+
GWHAAZE00000007	CDS	56498485	56498535	+
GWHAAZE00000007	CDS	56499050	56499275	+
GWHAAZE00000007	CDS	56499378	56499464	+
GWHAAZE00000007	CDS	56500410	56500987	+
GWHAAZE00000007	CDS	56501795	56502160	+

Transcript Sequence
>GWHTAAZE025201 ATGTGGAGATTCAAACCCTTTACTCATAAAGAGCAAACTGGACTCGAAGGTCGGACAATTGATGTTGGCAATCTGAAAATTCATGTTCGCAAAGCCATTGCTGAAGGTGGCTTCTCTTGTGTTTACTTAGCTCAAGATGCTGTAAATGGTTCCAAGCAATATGCAGTAAAGCACATCATTTGTAATGACGAAGAATTTCTGGAGCTGGTGATGAAAGAAATCTCTGTAATGAAATCTCTTCGCGGACACCCTAATGTTGTAACGCTACATGCCCATACCTTCTTTGATATGGGGAGGACGAAAGAAGCTCTCCTTGTTATGGAGTATTGCGACAAGTCTCTGGTTAATGTGCTGGAGAGCAGAGGTGCTGGGTACTTTGAGGAGAAACAGATCCTTGCAATGTTCAGGGATGTCTGTAACGCAGTCTTTGCAATGCATTGCCAGTCTCCACCCATTGCTCACCGAGACCTAAAAGCTGAGAATCTTTTGCTGGGGTCGGATGGATTATGGAAGTTGTGTGATTTTGGTAGTATCTCTACCAACCATAAGCGCTTTGAGAAGCCCGAAGAAATGGGCATTGAAGAAGATAATATAAGGAAGCACACTACTCCTGCCTATAGAGCCCCTGAGATGTGGGATTTGTTCCGGAGAGAACTTATAAACGAGAAGGTAGATATATGGGCCCTTGGGTGTCTTCTCTTTCGCATATCTTTCTTCAAGTCTGCTTTTGATGGTGAATCAAAGCTACAAATTTTGAATGGAAATTATCGCATACCAGAGTTGCCGAAGTACAGCTCATCAATCACGGACCTAATAAGGGACATGCTTCAATCTTCACCGGATGACAGACCAGACATCACGCAGGCAAGAGCTTTGCTTGATTGGCCATTCATCTCCATGAATTTAGTTAATGGTCTATTACCTGATGAGTTGCAAAAGTCTCTACCTGACAGACCACCTGAGATGCAACAACAGGTTACTGGCACACATGAAGGCACTCCAAAGCCCGGAAGTAAGGCTAGTCCGGTGCCTCGTAGGAGTCCACCACCACCACCAACGGTTACAGACTCAGCTCGGAATGGACCAATAGGTGCTTTTTGGACCACTCAACACGTGGACTCAGTTGTTGTTGAGGACAGCAGCGAGCCCACATATGACGAAGAACCCACCATCCGTAGACACAGCAATTATCATTCGGAGAGGATTACTCCTCCCCAAAAAACTACCCCTCCAAAGGAGCAAAAAAAGAGCACTCCTTCAAAGGACTTTGAAATAAATCTCTTTCAAGACAATTCAGAAAAAGATGGGGCGTATAATGCTTTTGTTGCTGAATTTAGTGCCAATAAACTCAGCCCGGGAAGTAACAGCAAGATATCTGGGAAAGAAGAGATGTTAGAGAGTGAGGTGGAAAAGCTTAAAGAACAGCTGAAGAAAGCGAATATTGAGAAGGCTGAAATAACGTCCAAATACGAAAAGCTATCCGCAATTTGCCGTTCACAACGACAAGAGATACAAGAGCTTAAGCAAGCCCTTGCTTCGAGGACTCCATCGCCGAATAAAGCCTCCCAGACTCGTAGTGAGAAGATCGAAGGAACAGTTTATGATCTCCAGCAAGGATTATATGGCAAAAATACTCCGAGCCCGGATCCTAAACAGTGGCAACCATTTGCTGAAGACACCAAGCCAAAATCAACTTCGATGAACGAAACACCCAAATCTGTTAGAACAAGAAATGGTAACCAAAACAAACAGGCCACTGGTGAAGTAACTCCAACAAGTGCGAACACATGGGGTTTTGGAACAGATAACTTTACTGCATTTCCTTCTTCGGGCTCTCAGGTATCTGTACCCATAAGTGAGCAAAGCTTTGGCAATCCGAAGAAGAAGATAGAAAGCAAGCCGTCGGCTTCTCAACCGGCTGGGTGGGCCGGTTTTTAG

Network for GWHGAAZE025167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	29	289	1.40E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	NAK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.077
	SRR3591706	second leaf	24.899
	SRR3591707	mature leaf	22.304
	SRR3591708	Shoot apex	28.480
	SRR3591709	Stem	84.264
	SRR3591710	White floral bud	37.386
	SRR3591711	White flower	28.880
	SRR3591712	Green floral bud	37.653
	SRR3591713	Yellow flower	22.077
SRP173429	SRR8316895	Juvenile bud stage	37.032
	SRR8316896	Juvenile bud stage	52.133
	SRR8316897	Juvenile bud stage	40.961
	SRR8316894	Third green stage	9.717
	SRR8316900	Third green stage	29.788
	SRR8316901	Third green stage	31.957
	SRR8316898	Complete white stage	13.138
	SRR8316899	Complete white stage	49.219
	SRR8316903	Complete white stage	23.539
	SRR8316902	Silver flowering stage	7.644
	SRR8316904	Silver flowering stage	11.576
	SRR8316905	Silver flowering stage	4.282
	SRR8316906	Gold flowering stage	13.515
	SRR8316907	Gold flowering stage	12.482
	SRR8316908	Gold flowering stage	15.709
SRP132670	SRR6706286	Control	32.119
	SRR6706287	Light intensity 50%	31.325
	SRR6706288	Light intensity 20%	33.322
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.060
	CNS0095593	Slightly white alabastrum(diploid) 2	23.456
	CNS0095594	Slightly white alabastrum(diploid) 3	24.314
	CNS0095595	Whole white alabastrum(diploid) 2	22.570
	CNS0095596	Whole white alabastrum(diploid) 3	14.612
	CNS0095597	Whole white alabastrum(diploid) 4	17.353
	CNS0095598	Silvery flower (diploied) 1	22.037
	CNS0095599	Silvery flower (diploied) 2	46.852
	CNS0095600	Silvery flower (diploied) 3	36.517
	CNS0095601	Golden flower (diploid) 1	47.386
	CNS0095602	Golden flower (diploid) 2	39.376
	CNS0095603	Golden flower (diploid) 3	38.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.658
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.279
	CNS0095610	Silvery flower (tetraploid) 1	30.426
	CNS0095611	Silvery flower (tetraploid) 2	27.904
	CNS0095612	Silvery flower (tetraploid) 3	22.583
	CNS0095613	Golden flower (tetraploid) 1	12.406
	CNS0095614	Golden flower (tetraploid) 2	22.174
	CNS0095615	Golden flower (tetraploid) 3	14.963
CRA001975	CRR073297	Stem 1	32.198
	CRR073298	Stem 2	29.565
	CRR073299	Stem 3	21.899
	CRR073300	Leaf 1	38.752
	CRR073301	Leaf 2	39.582
	CRR073302	Leaf 3	25.980
	CRR073303	Juvenile bud 1	33.652
	CRR073304	Juvenile bud 2	25.669
	CRR073305	Juvenile bud 3	37.785
	CRR073306	Third green 1	8.560
	CRR073307	Third green 2	9.213
	CRR073308	Third green 3	9.330
	CRR073309	Second white 1	5.075
	CRR073310	Second white 2	3.848
	CRR073311	Second white 3	2.442
	CRR073312	Silver flowering 1	2.153
	CRR073313	Silver flowering 2	1.574
	CRR073314	Silver flowering 3	1.971
	CRR073315	Gold flowering 1	8.083
	CRR073316	Gold flowering 2	21.457
	CRR073317	Gold flowering 3	6.597
	CRR073318	Tawny withering 1	37.385
	CRR073319	Tawny withering 2	46.535
	CRR073320	Tawny withering 3	52.106