Gene detail

Detail information of GWHGAAZE025165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602840.1	1.17566E-82	PREDICTED: bromodomain-containing protein DDB_G0270170 [Nicotiana tomentosiformis]
trEMBL	tr\|M1A773\|M1A773_SOLTU	2E-78	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400016155}
TAIR10	AT2G44430.1	9E-31	DNA-binding bromodomain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56450998	56452143	+
GWHAAZE00000007	mRNA	56450998	56452143	+
GWHAAZE00000007	exon	56450998	56451338	+
GWHAAZE00000007	exon	56451441	56452143	+
GWHAAZE00000007	CDS	56450998	56451338	+
GWHAAZE00000007	CDS	56451441	56452143	+

Transcript Sequence
>GWHTAAZE025199 ATGTCGAAACCACCACCGCCGGCGACGGAGGAGGAGATGGTGCTGACGTGGACGACTTGGGAGGAACTGTTGCTAACGTGCGCCGTGAAGAGGCACGGACTCAAAGACTGGGAATCGGTTGCCATGGAACTTCAGAACCGAAGCTCTAAACCTCTCGTATTGACCGCTCAAATCTGTCGAAACAAATACAACGACCTCAAACGCCGGTTCATCGACGAGAACGGCAGCGCTCCCGCTGCCGGCGACCGCCACGGCGATAGTATCCCCTGGCTCGAGGAGTTGCGGAAACTCCGTGTCGCTGAGCTCAAACAAGAGGTTCACCGACACGATCTCTCGATCCAGTCTCTACAGTTGAAAGTGAAACGATTAGAAGAAGAGCGAGAAAAAAACTCGATCGAGAATGATAAAAACGACAACGAGACACCAGATCTGAAGAACGAACCATTAGATGCAGAAAAACCTGCCGGAACAGGAGCCACGGTACCGGAAAATGTCACCGTCAAGTCTGTTTCCGGCGAGTATTCAGACCGGGACAGCCGGACGCTGAACGAATCGAATTCAGCGGAGAACCGGGATAAAACCGGGGATGCGGAACTGGAACCGGTTCAAACCGGTCCGGTTCAGCGAGATCCTGAGCCAAAACCGATTGCCGAAGATTCGTGCAACGACAGTTCTGATACGGTGGCTAAAATCGCGGCTTCTAAGCCGAGTTTGGAGAAGAGAACTGAGTCGAACGAGTTGCGTAATAATTCCGGGGCCGAGTCTAAAGAGAGAACAACAAATAATAAGGAAAGTAGTGACGTGCAGAGTTCAGCTAGTTTGACGAAGAAGATAAGGCGGAGAGGGGTGGTTGTTGGCGGCGGAGAGGAGAAGGATGGTGATGGTGGTGGTGGGGGTGGCGCCACCGTGAAAAGGGAGGTGGTTAAATCTGAGCCGTTGGTGGGGTTTTTGGATATTTTCAGGTCGCATAAACATGGATCGATTTTCGAGCGCCGGCTTGACATCCAGGTATGCTTAAGTGCTACTCATCTTCAATTTGATTAA

Network for GWHGAAZE025165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	16	66	7.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.352
	SRR3591706	second leaf	8.286
	SRR3591707	mature leaf	10.404
	SRR3591708	Shoot apex	9.566
	SRR3591709	Stem	9.261
	SRR3591710	White floral bud	23.688
	SRR3591711	White flower	42.194
	SRR3591712	Green floral bud	12.913
	SRR3591713	Yellow flower	32.853
SRP173429	SRR8316895	Juvenile bud stage	5.737
	SRR8316896	Juvenile bud stage	7.379
	SRR8316897	Juvenile bud stage	3.586
	SRR8316894	Third green stage	3.371
	SRR8316900	Third green stage	7.482
	SRR8316901	Third green stage	8.597
	SRR8316898	Complete white stage	9.779
	SRR8316899	Complete white stage	14.395
	SRR8316903	Complete white stage	20.386
	SRR8316902	Silver flowering stage	15.881
	SRR8316904	Silver flowering stage	22.095
	SRR8316905	Silver flowering stage	9.802
	SRR8316906	Gold flowering stage	35.035
	SRR8316907	Gold flowering stage	36.708
	SRR8316908	Gold flowering stage	30.975
SRP132670	SRR6706286	Control	15.440
	SRR6706287	Light intensity 50%	14.889
	SRR6706288	Light intensity 20%	14.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.961
	CNS0095593	Slightly white alabastrum(diploid) 2	7.857
	CNS0095594	Slightly white alabastrum(diploid) 3	10.414
	CNS0095595	Whole white alabastrum(diploid) 2	7.621
	CNS0095596	Whole white alabastrum(diploid) 3	3.791
	CNS0095597	Whole white alabastrum(diploid) 4	4.345
	CNS0095598	Silvery flower (diploied) 1	19.653
	CNS0095599	Silvery flower (diploied) 2	13.411
	CNS0095600	Silvery flower (diploied) 3	45.538
	CNS0095601	Golden flower (diploid) 1	17.551
	CNS0095602	Golden flower (diploid) 2	39.428
	CNS0095603	Golden flower (diploid) 3	37.331
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.500
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.741
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.952
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.004
	CNS0095610	Silvery flower (tetraploid) 1	46.768
	CNS0095611	Silvery flower (tetraploid) 2	29.709
	CNS0095612	Silvery flower (tetraploid) 3	50.671
	CNS0095613	Golden flower (tetraploid) 1	44.509
	CNS0095614	Golden flower (tetraploid) 2	37.924
	CNS0095615	Golden flower (tetraploid) 3	43.888
CRA001975	CRR073297	Stem 1	24.480
	CRR073298	Stem 2	25.058
	CRR073299	Stem 3	26.948
	CRR073300	Leaf 1	25.041
	CRR073301	Leaf 2	30.590
	CRR073302	Leaf 3	18.120
	CRR073303	Juvenile bud 1	21.868
	CRR073304	Juvenile bud 2	27.128
	CRR073305	Juvenile bud 3	28.097
	CRR073306	Third green 1	60.528
	CRR073307	Third green 2	59.641
	CRR073308	Third green 3	63.683
	CRR073309	Second white 1	69.309
	CRR073310	Second white 2	114.779
	CRR073311	Second white 3	118.121
	CRR073312	Silver flowering 1	125.096
	CRR073313	Silver flowering 2	90.522
	CRR073314	Silver flowering 3	102.541
	CRR073315	Gold flowering 1	21.927
	CRR073316	Gold flowering 2	26.773
	CRR073317	Gold flowering 3	16.627
	CRR073318	Tawny withering 1	41.449
	CRR073319	Tawny withering 2	60.386
	CRR073320	Tawny withering 3	41.649