Gene detail

Detail information of GWHGAAZE025164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17507.1	1.1933E-100	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7F8R0\|C3H14_ORYSJ	2E-87	Zinc finger CCCH domain-containing protein 14
trEMBL	tr\|A0A068VA91\|A0A068VA91_COFCA	4E-101	Coffea canephora DH200=94 genomic scaffold, scaffold_166 {ECO:0000313\|EMBL:CDP17507.1}
TAIR10	AT5G06770.1	1E-38	KH domain-containing protein / zinc finger (CCCH type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56398593	56399378	-
GWHAAZE00000007	mRNA	56398593	56399378	-
GWHAAZE00000007	exon	56398787	56399378	-
GWHAAZE00000007	exon	56398593	56398756	-
GWHAAZE00000007	CDS	56398787	56399378	-
GWHAAZE00000007	CDS	56398593	56398756	-

Transcript Sequence
>GWHTAAZE025198 TGTTCTAAACTTTGCAGCACCTCTGGTTGCTCATTCGGTGAAGGATGCCACTTCCTGCACTATGTTCCCGGTGGCTATAAGGCGGTCAGTCAGCTGTCTAATCTAGGCGGGCCCACTTCAAGAAAACCCACCCTCCCATCACCCTTCACCGATGGGCCTGGGCCCGCCCAACAGGCCAAAACCAAGCTCTGCAACAGGATCAACACCCCCGAGGGCTGCAAATTCGGGGACAAATGCCGATTTGCCCACACCGAGCCTGTGTCGGGTTTCTCGGGTTATGAAGACCCTCGATCCTCAGGTCCCATGGGCTATGGCAGCTCATATGGGTACAACCCGTCCCCACCTGGGCTAGCCGCTTCGGCTAACTTCGGTGCTTCAGCTACGGCCAAGATAAGCATAGATGCATCTCTAGCTGGAGCTGTCATTGGTAAGGGTGGGGTGAACTCAAAGCAAATATGCCGGCTCACAGGGGTCAAGCTTGCTGTAAGAGAGCACGACTCGGACCAGAACCAGAGGAACATTGAGCTCGAAGGGTCATTTGACCAGATCAAGGAGGCTAGCTCGATGGTTCGGGAGCTCATCATGAACCTTGGTGCCGCTCCTCCGGCCAGGCACTTTGGTGGACCGCCCGGCGGAGCTCCGGCAAGCAATTTCAAAACAAAGGCGTGTGAGAAGTTTGCAAAGGGGATGTGTACTTTTGGGGAAAGGTGCCATTTTGCACATGGAGACCACGAACTGCGCAGGACAGTGGCCTGA

Network for GWHGAAZE025164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14608.7	zf-CCCH_2	9	20	1.6
PF14608.7	zf-CCCH_2	73	83	0.036
PF00013.30	KH_1	129	192	1.40E-11
PF00642.25	zf-CCCH	218	242	1.40E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0046872	molecular_function	metal ion binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.235
	SRR3591706	second leaf	34.024
	SRR3591707	mature leaf	36.591
	SRR3591708	Shoot apex	56.501
	SRR3591709	Stem	32.026
	SRR3591710	White floral bud	53.186
	SRR3591711	White flower	63.702
	SRR3591712	Green floral bud	62.582
	SRR3591713	Yellow flower	52.689
SRP173429	SRR8316895	Juvenile bud stage	37.973
	SRR8316896	Juvenile bud stage	49.860
	SRR8316897	Juvenile bud stage	18.642
	SRR8316894	Third green stage	16.907
	SRR8316900	Third green stage	44.069
	SRR8316901	Third green stage	56.891
	SRR8316898	Complete white stage	25.687
	SRR8316899	Complete white stage	79.556
	SRR8316903	Complete white stage	28.244
	SRR8316902	Silver flowering stage	24.852
	SRR8316904	Silver flowering stage	21.079
	SRR8316905	Silver flowering stage	11.008
	SRR8316906	Gold flowering stage	44.043
	SRR8316907	Gold flowering stage	46.084
	SRR8316908	Gold flowering stage	48.971
SRP132670	SRR6706286	Control	85.976
	SRR6706287	Light intensity 50%	84.096
	SRR6706288	Light intensity 20%	87.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.590
	CNS0095593	Slightly white alabastrum(diploid) 2	60.572
	CNS0095594	Slightly white alabastrum(diploid) 3	49.549
	CNS0095595	Whole white alabastrum(diploid) 2	43.051
	CNS0095596	Whole white alabastrum(diploid) 3	47.009
	CNS0095597	Whole white alabastrum(diploid) 4	38.717
	CNS0095598	Silvery flower (diploied) 1	51.737
	CNS0095599	Silvery flower (diploied) 2	43.971
	CNS0095600	Silvery flower (diploied) 3	46.092
	CNS0095601	Golden flower (diploid) 1	46.721
	CNS0095602	Golden flower (diploid) 2	46.747
	CNS0095603	Golden flower (diploid) 3	47.267
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.411
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.398
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.213
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.762
	CNS0095610	Silvery flower (tetraploid) 1	42.666
	CNS0095611	Silvery flower (tetraploid) 2	32.848
	CNS0095612	Silvery flower (tetraploid) 3	31.332
	CNS0095613	Golden flower (tetraploid) 1	45.035
	CNS0095614	Golden flower (tetraploid) 2	42.060
	CNS0095615	Golden flower (tetraploid) 3	47.783
CRA001975	CRR073297	Stem 1	76.849
	CRR073298	Stem 2	70.177
	CRR073299	Stem 3	96.007
	CRR073300	Leaf 1	74.286
	CRR073301	Leaf 2	78.650
	CRR073302	Leaf 3	89.018
	CRR073303	Juvenile bud 1	73.627
	CRR073304	Juvenile bud 2	66.109
	CRR073305	Juvenile bud 3	69.141
	CRR073306	Third green 1	29.093
	CRR073307	Third green 2	33.948
	CRR073308	Third green 3	31.648
	CRR073309	Second white 1	50.520
	CRR073310	Second white 2	43.216
	CRR073311	Second white 3	40.817
	CRR073312	Silver flowering 1	46.130
	CRR073313	Silver flowering 2	73.451
	CRR073314	Silver flowering 3	47.748
	CRR073315	Gold flowering 1	75.610
	CRR073316	Gold flowering 2	95.941
	CRR073317	Gold flowering 3	84.449
	CRR073318	Tawny withering 1	94.363
	CRR073319	Tawny withering 2	98.236
	CRR073320	Tawny withering 3	111.149