Detail information of GWHGAAZE025162


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004229347.16.98596E-50PREDICTED: uncharacterized protein LOC101250440 [Solanum lycopersicum]
Swissprottr|Q6R567|RMA1_CAPAN2E-13E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|M1A763|M1A763_SOLTU5E-50Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400016144}
TAIR10AT2G44410.16E-30RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5638311456383842+
GWHAAZE00000007mRNA5638311456383842+
GWHAAZE00000007exon5638311456383842+
GWHAAZE00000007CDS5638311456383842+
Transcript Sequence

Network for GWHGAAZE025162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.153
SRR3591706second leaf4.908
SRR3591707mature leaf7.603
SRR3591708Shoot apex7.386
SRR3591709Stem12.592
SRR3591710White floral bud15.952
SRR3591711White flower20.314
SRR3591712Green floral bud14.245
SRR3591713Yellow flower12.483
SRP173429 SRR8316895Juvenile bud stage 6.160
SRR8316896Juvenile bud stage 4.873
SRR8316897Juvenile bud stage 1.706
SRR8316894Third green stage 3.558
SRR8316900Third green stage 10.016
SRR8316901Third green stage 9.832
SRR8316898Complete white stage 7.243
SRR8316899Complete white stage 18.510
SRR8316903Complete white stage 10.465
SRR8316902Silver flowering stage6.418
SRR8316904Silver flowering stage8.682
SRR8316905Silver flowering stage4.369
SRR8316906Gold flowering stage 11.700
SRR8316907Gold flowering stage 10.995
SRR8316908Gold flowering stage 12.744
SRP132670SRR6706286Control10.397
SRR6706287Light intensity 50%10.224
SRR6706288Light intensity 20%11.728
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.189
CNS0095593Slightly white alabastrum(diploid) 29.735
CNS0095594Slightly white alabastrum(diploid) 36.671
CNS0095595Whole white alabastrum(diploid) 28.292
CNS0095596Whole white alabastrum(diploid) 37.394
CNS0095597Whole white alabastrum(diploid) 47.854
CNS0095598Silvery flower (diploied) 19.723
CNS0095599Silvery flower (diploied) 25.681
CNS0095600Silvery flower (diploied) 311.360
CNS0095601Golden flower (diploid) 17.132
CNS0095602Golden flower (diploid) 210.879
CNS0095603Golden flower (diploid) 39.325
CNS0095604Slightly white alabastrum(tetraploid) 110.925
CNS0095605Slightly white alabastrum(tetraploid) 27.178
CNS0095606Slightly white alabastrum(tetraploid) 312.980
CNS0095607Whole white alabastrum(tetraploid) 15.738
CNS0095608Whole white alabastrum(tetraploid) 27.186
CNS0095609Whole white alabastrum(tetraploid) 39.912
CNS0095610Silvery flower (tetraploid) 113.556
CNS0095611Silvery flower (tetraploid) 212.621
CNS0095612Silvery flower (tetraploid) 328.789
CNS0095613Golden flower (tetraploid) 19.782
CNS0095614Golden flower (tetraploid) 211.454
CNS0095615Golden flower (tetraploid) 312.510
CRA001975CRR073297Stem 121.248
CRR073298Stem 221.077
CRR073299Stem 328.329
CRR073300Leaf 124.006
CRR073301Leaf 222.725
CRR073302Leaf 322.193
CRR073303Juvenile bud 123.609
CRR073304Juvenile bud 218.595
CRR073305Juvenile bud 327.669
CRR073306Third green 128.439
CRR073307Third green 220.704
CRR073308Third green 328.984
CRR073309Second white 136.344
CRR073310Second white 231.618
CRR073311Second white 336.250
CRR073312Silver flowering 125.429
CRR073313Silver flowering 225.658
CRR073314Silver flowering 319.836
CRR073315Gold flowering 114.885
CRR073316Gold flowering 222.136
CRR073317Gold flowering 315.875
CRR073318Tawny withering 116.394
CRR073319Tawny withering 216.609
CRR073320Tawny withering 312.895