Gene detail

Detail information of GWHGAAZE025154

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008351677.1	1.9728E-154	PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Malus domestica]
COG	YP_003901943.1	1E-36	bis(5'-nucleosyl)-tetraphosphatase
Swissprot	tr\|Q10BT5\|PP2A2_ORYSJ	2E-154	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit
trEMBL	tr\|M0TQN9\|M0TQN9_MUSAM	6E-154	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT3G58500.1	4E-122	protein phosphatase 2A-4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56206065	56213378	-
GWHAAZE00000007	mRNA	56206065	56213378	-
GWHAAZE00000007	exon	56213262	56213378	-
GWHAAZE00000007	exon	56212415	56212486	-
GWHAAZE00000007	exon	56211818	56211889	-
GWHAAZE00000007	exon	56211016	56211056	-
GWHAAZE00000007	exon	56207746	56207812	-
GWHAAZE00000007	exon	56206420	56206611	-
GWHAAZE00000007	exon	56206065	56206325	-
GWHAAZE00000007	CDS	56213262	56213378	-
GWHAAZE00000007	CDS	56212415	56212486	-
GWHAAZE00000007	CDS	56211818	56211889	-
GWHAAZE00000007	CDS	56211016	56211056	-
GWHAAZE00000007	CDS	56207746	56207812	-
GWHAAZE00000007	CDS	56206420	56206611	-
GWHAAZE00000007	CDS	56206065	56206325	-

Transcript Sequence
>GWHTAAZE025188 ATGCTGAATTGGTTTCTCCTTCCTTGTATGCAGCCTGTTAAAAGTCCTGTGACGATTTGTGGTGATATTCACGGGCAATTTCACGATCTTGCAGAACTTTTTCGAATTGGAGGGAAGTGTCCGGATACAAATTACTTGTTTATGGGAGATTATGTGGATCGTGGGTATTATTCAGTTGAAACTGTCACACTCTTAGTAGCCCTGAAGGTGCGATATCATCAGAGAATCACAATTCTTAGAGGAAATCATGAAAGTCGGCAGATTACTCAAGTCTATGGGTTTTATGATGAATGCCTTCGGAAGTACGGGAATGCTAATGTTTGGAAGACATTTACGGATCTTTTTGATTATTTCCCATTGACTGCATTGGTTGAATCGGAAATATTTTGTCTTCATGGTGGATTGTCCCCTTCCATTGAAACACTTGATAATATAAGAAATTTTGACCGTGTTCAAGAAGTTCCACATGAAGGCCCCATGTGTGATCTTTTATGGTCTGATCCTGATGACCGTTGTGGTTGGGGTATCTCTCCCCGCGGTGCTGGATACACTTTTGGCCAAGATATATCGGAGCAATTCAACCATACTAACAATCTAAAGCTGATTGCTAGAGCTCATCAGTTGGTTATGGAAGGATATAATTGGGGACATGTAATAATTCAAAAGTTGCTATATATTTTTGATTTAGTCCATTATTTAGGTAATTTGGGGTTTGCTTATTTGATTGCTGCATCTTTAACAGGAGCAAAAAGTTGTCACTATTTTCAGTGCACCAAATTATTGTTATCGTTGTGGAAACATGGCATCTATTTTGGAAGTTGA

Network for GWHGAAZE025154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	16	207	2.50E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04382	PPP2C	mRNA surveillance pathway	map03015
		MAPK signaling pathway - fly	map04013
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	116.398
	SRR3591706	second leaf	46.541
	SRR3591707	mature leaf	43.028
	SRR3591708	Shoot apex	91.797
	SRR3591709	Stem	96.966
	SRR3591710	White floral bud	106.565
	SRR3591711	White flower	82.322
	SRR3591712	Green floral bud	114.195
	SRR3591713	Yellow flower	85.974
SRP173429	SRR8316895	Juvenile bud stage	51.803
	SRR8316896	Juvenile bud stage	70.769
	SRR8316897	Juvenile bud stage	34.518
	SRR8316894	Third green stage	30.224
	SRR8316900	Third green stage	97.005
	SRR8316901	Third green stage	92.770
	SRR8316898	Complete white stage	63.734
	SRR8316899	Complete white stage	137.766
	SRR8316903	Complete white stage	82.564
	SRR8316902	Silver flowering stage	38.688
	SRR8316904	Silver flowering stage	57.837
	SRR8316905	Silver flowering stage	27.842
	SRR8316906	Gold flowering stage	96.175
	SRR8316907	Gold flowering stage	82.552
	SRR8316908	Gold flowering stage	87.785
SRP132670	SRR6706286	Control	88.407
	SRR6706287	Light intensity 50%	89.399
	SRR6706288	Light intensity 20%	94.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.334
	CNS0095593	Slightly white alabastrum(diploid) 2	73.144
	CNS0095594	Slightly white alabastrum(diploid) 3	55.532
	CNS0095595	Whole white alabastrum(diploid) 2	73.056
	CNS0095596	Whole white alabastrum(diploid) 3	72.209
	CNS0095597	Whole white alabastrum(diploid) 4	87.418
	CNS0095598	Silvery flower (diploied) 1	78.307
	CNS0095599	Silvery flower (diploied) 2	60.759
	CNS0095600	Silvery flower (diploied) 3	85.310
	CNS0095601	Golden flower (diploid) 1	94.729
	CNS0095602	Golden flower (diploid) 2	109.060
	CNS0095603	Golden flower (diploid) 3	103.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	91.128
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.122
	CNS0095610	Silvery flower (tetraploid) 1	68.495
	CNS0095611	Silvery flower (tetraploid) 2	74.531
	CNS0095612	Silvery flower (tetraploid) 3	49.496
	CNS0095613	Golden flower (tetraploid) 1	47.187
	CNS0095614	Golden flower (tetraploid) 2	65.423
	CNS0095615	Golden flower (tetraploid) 3	61.023
CRA001975	CRR073297	Stem 1	71.136
	CRR073298	Stem 2	67.365
	CRR073299	Stem 3	66.944
	CRR073300	Leaf 1	83.546
	CRR073301	Leaf 2	72.938
	CRR073302	Leaf 3	76.549
	CRR073303	Juvenile bud 1	97.464
	CRR073304	Juvenile bud 2	62.232
	CRR073305	Juvenile bud 3	82.376
	CRR073306	Third green 1	30.365
	CRR073307	Third green 2	36.065
	CRR073308	Third green 3	38.579
	CRR073309	Second white 1	47.813
	CRR073310	Second white 2	42.785
	CRR073311	Second white 3	35.243
	CRR073312	Silver flowering 1	32.982
	CRR073313	Silver flowering 2	38.168
	CRR073314	Silver flowering 3	30.406
	CRR073315	Gold flowering 1	51.276
	CRR073316	Gold flowering 2	45.178
	CRR073317	Gold flowering 3	49.299
	CRR073318	Tawny withering 1	85.622
	CRR073319	Tawny withering 2	68.708
	CRR073320	Tawny withering 3	77.731