Gene detail

Detail information of GWHGAAZE025131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661301.1	1.8689E-139	PREDICTED: transcription factor bHLH91-like [Vitis vinifera]
Swissprot	tr\|Q8GX46\|BH091_ARATH	7E-80	Transcription factor bHLH91
trEMBL	tr\|F6I1S3\|F6I1S3_VITVI	1E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60890.1}
TAIR10	AT2G31220.1	8E-62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55831639	55833313	-
GWHAAZE00000007	mRNA	55831639	55833313	-
GWHAAZE00000007	exon	55831639	55832073	-
GWHAAZE00000007	exon	55832510	55833313	-
GWHAAZE00000007	CDS	55832510	55833313	-
GWHAAZE00000007	CDS	55831639	55832073	-

Transcript Sequence
>GWHTAAZE025165 ATGTTGGTGAACCCAGAAATGTACGAAGATAATAACTCAACAAGCTTTGATCCAAATTCTATTCAAGGGCTACCCAATGATGGGTTCTCACAAGCAAATCACCCCCAAATTTGTAACCCTAATTTCTCAATTGAAGAACAACACCTCACTTACCACCAAAATCACCCCAACCAAGATGCTGCCCTGGAAATGGAGTTTCAAAATCAGCTCATCCTAGAGATGGACCACTGTTACAACCCCAACACCACCGCACACCACATCAATGACATCACTGCCACCAACACCACCACCCATTTTATGCAAGAAGTGGTACATGATGAACCCAACTGGGATTATTACCAGCAAGAACAAAACAATGGAGGGTCTCATCAAAACCAGTACTCTCAAACACCAGATCTCCTCAATTTGTTCAATATACCAAGATCCACTATCCTCCCAAATTCATCCATCAACTTTTCGAACCAGACCCACGACTCGGGTCCGAGTGTTTTGTACGACCCACTTTTGCATTTGAATTTGCCCCCACAGCCTCCTGTGTTTAGGGACTTGTTTCAGGGTCTGCCCCATGGGTATGGTTTGCCCGGCTCGAGGACTGGGTCGTTGTTCGGTGGATTGGATGAGAGAGAGGGAAGTGGAGGGGTGTACCAAGATGGAGATGGGAGCCAGTTTGATAATGGGGTATTGGAGTTTAGGAGAGGGAGAGACGGGAAAGATACAAAACACTTTGCTACTGAGAGGCAAAGGAGAGTTCACTTGAATGATAAGTATAAGGCTTTGAGGAGTTTGGTTCCTAATCCCACCAAGCCTGATAGAGCATCAGTAGTGGGAGATGCAATTCAATACATAGAAGAGCTCAAAAGAACGGTGACAGAGCTCAAGATTCTGGTAGAGAAAAAAAGATGCAGTAGAGAGAGAATGAAGAGGCACAAAATGGAAGATGGCTCTGCAATTGATCAGACGGATAGCATCAACATGAAGCCTCATGGTGATCCAGATCAGTCCTTCAATGGATCTTCATCACTGAGAAGCTCATGGCTTCAGAGGAAGTCAAAGAACACTGAGGTCGATGTTCGTATAATTGATGATGAAGCCACCATTAAATTGGTGCAGCAAAAAAGAATTAATTGTTTGTTGTTCGTGTCAAAGGCTCTTGATGAACTCCAGCTGGATCTTCACCATGTTGCTGGTGGAGTCATTGGTGATTTCTACAGTTTCTTGTTCAACACCAAGGTGCTTTAA

Network for GWHGAAZE025131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	239	285	8.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.184
	SRR3591706	second leaf	1.294
	SRR3591707	mature leaf	0.343
	SRR3591708	Shoot apex	0.580
	SRR3591709	Stem	1.251
	SRR3591710	White floral bud	1.639
	SRR3591711	White flower	1.539
	SRR3591712	Green floral bud	3.232
	SRR3591713	Yellow flower	1.002
SRP173429	SRR8316895	Juvenile bud stage	1.329
	SRR8316896	Juvenile bud stage	4.605
	SRR8316897	Juvenile bud stage	0.929
	SRR8316894	Third green stage	2.149
	SRR8316900	Third green stage	1.110
	SRR8316901	Third green stage	1.698
	SRR8316898	Complete white stage	0.589
	SRR8316899	Complete white stage	0.764
	SRR8316903	Complete white stage	0.474
	SRR8316902	Silver flowering stage	0.143
	SRR8316904	Silver flowering stage	0.371
	SRR8316905	Silver flowering stage	0.039
	SRR8316906	Gold flowering stage	0.160
	SRR8316907	Gold flowering stage	1.901
	SRR8316908	Gold flowering stage	0.077
SRP132670	SRR6706286	Control	1.423
	SRR6706287	Light intensity 50%	1.363
	SRR6706288	Light intensity 20%	0.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.600
	CNS0095593	Slightly white alabastrum(diploid) 2	1.107
	CNS0095594	Slightly white alabastrum(diploid) 3	0.738
	CNS0095595	Whole white alabastrum(diploid) 2	0.750
	CNS0095596	Whole white alabastrum(diploid) 3	1.018
	CNS0095597	Whole white alabastrum(diploid) 4	1.200
	CNS0095598	Silvery flower (diploied) 1	0.278
	CNS0095599	Silvery flower (diploied) 2	0.165
	CNS0095600	Silvery flower (diploied) 3	0.246
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.400
	CNS0095603	Golden flower (diploid) 3	0.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.634
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.076
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.758
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.284
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.454
	CNS0095610	Silvery flower (tetraploid) 1	0.217
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.185
	CNS0095613	Golden flower (tetraploid) 1	0.167
	CNS0095614	Golden flower (tetraploid) 2	0.310
	CNS0095615	Golden flower (tetraploid) 3	0.308
CRA001975	CRR073297	Stem 1	6.589
	CRR073298	Stem 2	7.462
	CRR073299	Stem 3	7.350
	CRR073300	Leaf 1	1.680
	CRR073301	Leaf 2	1.324
	CRR073302	Leaf 3	2.633
	CRR073303	Juvenile bud 1	1.330
	CRR073304	Juvenile bud 2	0.831
	CRR073305	Juvenile bud 3	1.030
	CRR073306	Third green 1	0.122
	CRR073307	Third green 2	0.552
	CRR073308	Third green 3	0.418
	CRR073309	Second white 1	0.091
	CRR073310	Second white 2	0.232
	CRR073311	Second white 3	0.022
	CRR073312	Silver flowering 1	0.077
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.513
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.846
	CRR073319	Tawny withering 2	0.139
	CRR073320	Tawny withering 3	0.725