Gene detail

Detail information of GWHGAAZE025111

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002321254.2	0	DNA replication helicase family protein [Populus trichocarpa]
COG	YP_003737002.1	2E-49	DNA replication factor Dna2
Swissprot	tr\|Q8GYD9\|SDE3_ARATH	1E-17	Probable RNA helicase SDE3
trEMBL	tr\|B9IB54\|B9IB54_POPTR	0	DNA replication helicase family protein {ECO:0000313\|EMBL:EEE99569.2}
TAIR10	AT1G08840.1	0	DNA replication helicase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55333545	55347186	+
GWHAAZE00000007	mRNA	55333545	55347186	+
GWHAAZE00000007	exon	55333545	55333591	+
GWHAAZE00000007	exon	55333673	55333735	+
GWHAAZE00000007	exon	55334497	55334629	+
GWHAAZE00000007	exon	55334954	55335064	+
GWHAAZE00000007	exon	55335173	55335269	+
GWHAAZE00000007	exon	55335489	55335571	+
GWHAAZE00000007	exon	55335809	55335874	+
GWHAAZE00000007	exon	55336658	55336817	+
GWHAAZE00000007	exon	55336910	55336973	+
GWHAAZE00000007	exon	55337055	55337160	+
GWHAAZE00000007	exon	55337670	55337804	+
GWHAAZE00000007	exon	55342051	55342125	+
GWHAAZE00000007	exon	55342258	55342379	+
GWHAAZE00000007	exon	55342491	55342563	+
GWHAAZE00000007	exon	55342643	55342747	+
GWHAAZE00000007	exon	55342996	55343163	+
GWHAAZE00000007	exon	55343491	55343563	+
GWHAAZE00000007	exon	55343674	55343825	+
GWHAAZE00000007	exon	55344634	55344726	+
GWHAAZE00000007	exon	55344818	55344955	+
GWHAAZE00000007	exon	55345074	55345113	+
GWHAAZE00000007	exon	55345200	55345273	+
GWHAAZE00000007	exon	55345392	55345526	+
GWHAAZE00000007	exon	55346549	55346668	+
GWHAAZE00000007	exon	55347028	55347186	+
GWHAAZE00000007	five_prime_UTR	55333545	55333591	+
GWHAAZE00000007	five_prime_UTR	55333673	55333688	+
GWHAAZE00000007	CDS	55333689	55333735	+
GWHAAZE00000007	CDS	55334497	55334629	+
GWHAAZE00000007	CDS	55334954	55335064	+
GWHAAZE00000007	CDS	55335173	55335269	+
GWHAAZE00000007	CDS	55335489	55335571	+
GWHAAZE00000007	CDS	55335809	55335874	+
GWHAAZE00000007	CDS	55336658	55336817	+
GWHAAZE00000007	CDS	55336910	55336973	+
GWHAAZE00000007	CDS	55337055	55337160	+
GWHAAZE00000007	CDS	55337670	55337804	+
GWHAAZE00000007	CDS	55342051	55342125	+
GWHAAZE00000007	CDS	55342258	55342379	+
GWHAAZE00000007	CDS	55342491	55342563	+
GWHAAZE00000007	CDS	55342643	55342747	+
GWHAAZE00000007	CDS	55342996	55343163	+
GWHAAZE00000007	CDS	55343491	55343563	+
GWHAAZE00000007	CDS	55343674	55343825	+
GWHAAZE00000007	CDS	55344634	55344726	+
GWHAAZE00000007	CDS	55344818	55344955	+
GWHAAZE00000007	CDS	55345074	55345113	+
GWHAAZE00000007	CDS	55345200	55345273	+
GWHAAZE00000007	CDS	55345392	55345526	+
GWHAAZE00000007	CDS	55346549	55346668	+
GWHAAZE00000007	CDS	55347028	55347186	+

Transcript Sequence
>GWHTAAZE025145 CTGAGAAGCAACCTATTGATTCATCTGGTTCCCAGTACCCTTATAAGGTTCTGCGGTTGCTGAATGAGCAAAGTGGAGAAGAAGCGTGCTGTGCATTTGTGGGATGAGTGGTTTTATAGCATCATTGCACCGGGTGATACTGTTAATGTCATAGGTGAATTTGATGAGCAGGGAAAGTGTGATGTGAACCGTGACAACAGTTTTCTAATCGTGCACCCAGATACCTTGGTTTCTGGAACTCGGGTTGCTGCCAGTTTCAGTTGCCCTCGGCGAACTGTTCTCGATGAGAGGCTTAAAGGAAGTGAACATTCAGCACCAGCCTTGATTGGAACCTTACTGCATCAACTTTTTCAGGCAGCACTTATTAAAGAAATTCCAACAAAAGAATTTTTGGAGGAGTATGCAAGAGTGGTGCTCCAAAAGAATTTTGAGAGCTTGTATGCATGTGGAGTAAATGAAAGTGATACCTATAAGAAATTGATTGAGGCAATCCCTAAAATATTAGACTGGATCCTTGTCTTCCGTGATTCACAGGGTTCCAAAATACCAAATGTTGATTTTGGATCTGATGATGGGCTTAAGAAGGTGAAAATATCTGAGGTAGTTGATATTGAGGAAATGGCATGGGCCCCAAAATATGGCTTGAAAGGAATTATTGATGCCTCCATCCGAGTAAAAATTGAATCAAGAGCCAAGGAAACTAATGAGAAGTTTATGCCTCTAGAGTTCAAAACTGGGAAAGGAACCAGTGGCCAGGCAATTCTGCAGACTGCTATGGAACATAGTGCTCAAGTGATGTTGTACACCCTTCTTATGTCAGAGAGGATTGGATTAAGAGCTGGGATTGCAACTCCACAGGGCTTAGCCAGCCAGGTGGGGTTTCAATCTGACACGGCTCTAACGGGGTGGGTTCTCTTTGAATCAGGGTGGTTGACTGTCCAAACATATGTAAAGGGAATTGCAGTTAAAAGATCTGATTTGGTTGGGCTAATTATGCGGCGTAATGAACTTGCAAATGATATTCTTAAGGCATCAACAGCGCAGCAACTGCCACCAATGATACAGATACTAAGCACTGAACCTGAACGTCTAACAATTGCCAGTGGGGTCATAATGGAAATCAATCGCTCCTGTGTTTTGGTTTCTTTTTCAAAGCGATTAAGGCTTCCAGGGAGGAGCCTTTCTTCAGCCTGCCAAGATCTCCGCCAGCAGGTTTGGCGGATTGACAAAGATGAATTTATGGCATCATTTGCAATTATGAGGTACAACCTTGTACAGCTTTTTCTACAAGATGAATGGAGTTCTCGTCTTAGGAGGATGATTGTTGACCTCAAGGCTCCTAGATTTGACAGTGGATGTATATTTAGTCAAGATCCTGCTGTATCATACATATGGTCAGAGAAGAACTTGAATGATGATCAGCGCAGAGCCATACTCAAGATACTTACAGCAAAGGATTACACACTGATTCTAGGAATGCCTGGAACTGGGAAAACATCGACAATGGTGCATGCAGTGAAGGCACTGTTGATGAGAGATGCATCCATTTTGCTTACATCCTACACAAACTCGGCCGTCGATAATTTGCTTATCAAACTCAAAGCACAGGGCATAGATTTTATACGCATTGGCCGAAATGAAGAAGCTGTGCATGAAGAAGTTCGAGATCATTGCATTTCTGCAATGGACATGCACGGTATTGAAGAAATTAAGCATAGGCTAGACCAAGTCAAAGTTGTTGCTGTTACTTGTTTAGGGATAAATAGTCCCTTGCTTGCCAACAAGAGATTTGATGTATGCATCATGGATGAGGCTGGACAGACTACTCTTCCTAGTACAGAGGCTCGAGAAAATGGAATGGGCATAAGCCTGTTTTGTAGGCTTTCAGAAGCACATCCACAGGCAATTTCAGCTTTGCAGAGTCAGTACCGTATGTGTGCACCCATTATGGAGCTATCAAATGCCTTGATATATGGTAACAGATTACGTTGTGGTTCTACTGACGTAGAGAATGCAAAACTTAAGTACATTAGTTCAACTTCTGTATCATCATGGCTCAAGGAGGTTTTGAATCCTGACAGACAAGTTATATTTATTAACACAGATTTATTGCCGGCTTTTGAGGTAAAAGATTGCAAGACAGTGAATAACCCACTTGAAGGTTATATTATTACGGAGATCACAGACAAATTGGTTTGCAGAGGCATTCGTGGTGAAGATATCGGAGTGATTACCCCCTATAACTCTCAAGCGAATCTCATCCACCAATCTGTTTCTGCATCTGTGGAAATACATACGATTGATAAATATCAGGGAAGGGACAAGGATTGCATATTGGTATCATTTGTAAGGTCTAGCAAAAACCCGAGGAACTGCACTTCTTCGTTGCTCGGAGATTGGCACAGGATTAACGTCGCTCTTACCCGTGCCAAGAAAAAGTTGATAATGGTGGGGTCATGCAAGACACTATCGAAGGTTCCACTAATGAAGCTTGTGATTGAGAAAGTGGAAGAACAGTCGGGAATATTGAGTGTATCCAAAAAGGATATTAATCACATTGGAGAGCTCAAGAGATGCTCCCAAATCAGATGA

Network for GWHGAAZE025111

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08696.12	Dna2	4	204	1.50E-58
PF13086.7	AAA_11	448	540	1.20E-15
PF13087.7	AAA_12	601	799	5.20E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10742	DNA2	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.506
	SRR3591706	second leaf	1.081
	SRR3591707	mature leaf	0.345
	SRR3591708	Shoot apex	9.033
	SRR3591709	Stem	0.994
	SRR3591710	White floral bud	0.377
	SRR3591711	White flower	0.564
	SRR3591712	Green floral bud	1.119
	SRR3591713	Yellow flower	0.549
SRP173429	SRR8316895	Juvenile bud stage	1.845
	SRR8316896	Juvenile bud stage	2.696
	SRR8316897	Juvenile bud stage	1.193
	SRR8316894	Third green stage	1.102
	SRR8316900	Third green stage	1.606
	SRR8316901	Third green stage	1.574
	SRR8316898	Complete white stage	0.121
	SRR8316899	Complete white stage	1.140
	SRR8316903	Complete white stage	0.174
	SRR8316902	Silver flowering stage	0.141
	SRR8316904	Silver flowering stage	0.469
	SRR8316905	Silver flowering stage	0.026
	SRR8316906	Gold flowering stage	0.509
	SRR8316907	Gold flowering stage	0.249
	SRR8316908	Gold flowering stage	0.454
SRP132670	SRR6706286	Control	1.177
	SRR6706287	Light intensity 50%	1.134
	SRR6706288	Light intensity 20%	1.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.207
	CNS0095593	Slightly white alabastrum(diploid) 2	2.153
	CNS0095594	Slightly white alabastrum(diploid) 3	2.578
	CNS0095595	Whole white alabastrum(diploid) 2	1.455
	CNS0095596	Whole white alabastrum(diploid) 3	2.189
	CNS0095597	Whole white alabastrum(diploid) 4	1.628
	CNS0095598	Silvery flower (diploied) 1	0.852
	CNS0095599	Silvery flower (diploied) 2	1.250
	CNS0095600	Silvery flower (diploied) 3	0.430
	CNS0095601	Golden flower (diploid) 1	0.923
	CNS0095602	Golden flower (diploid) 2	0.429
	CNS0095603	Golden flower (diploid) 3	0.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.931
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.206
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.985
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.650
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.021
	CNS0095610	Silvery flower (tetraploid) 1	0.437
	CNS0095611	Silvery flower (tetraploid) 2	0.381
	CNS0095612	Silvery flower (tetraploid) 3	0.519
	CNS0095613	Golden flower (tetraploid) 1	0.241
	CNS0095614	Golden flower (tetraploid) 2	0.127
	CNS0095615	Golden flower (tetraploid) 3	0.267
CRA001975	CRR073297	Stem 1	2.915
	CRR073298	Stem 2	2.090
	CRR073299	Stem 3	1.530
	CRR073300	Leaf 1	1.061
	CRR073301	Leaf 2	0.939
	CRR073302	Leaf 3	0.806
	CRR073303	Juvenile bud 1	0.679
	CRR073304	Juvenile bud 2	0.573
	CRR073305	Juvenile bud 3	0.914
	CRR073306	Third green 1	0.213
	CRR073307	Third green 2	0.080
	CRR073308	Third green 3	0.061
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.034
	CRR073311	Second white 3	0.192
	CRR073312	Silver flowering 1	0.082
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	0.543
	CRR073316	Gold flowering 2	0.293
	CRR073317	Gold flowering 3	0.013
	CRR073318	Tawny withering 1	2.156
	CRR073319	Tawny withering 2	1.123
	CRR073320	Tawny withering 3	1.641