Detail information of GWHGAAZE025097


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09393.11.0019E-90unnamed protein product [Coffea canephora]
Swissprottr|Q76E23|IF4G_ARATH2E-67Eukaryotic translation initiation factor 4G
trEMBLtr|A0A068UP38|A0A068UP38_COFCA4E-91Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09393.1}
TAIR10AT3G60240.21E-59eukaryotic translation initiation factor 4G

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5507008855072359-
GWHAAZE00000007mRNA5507008855072359-
GWHAAZE00000007exon5507008855070418-
GWHAAZE00000007exon5507214855072359-
GWHAAZE00000007CDS5507214855072359-
GWHAAZE00000007CDS5507008855070418-
Transcript Sequence

Network for GWHGAAZE025097

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02847.18MA351071.40E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03260EIF4G RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.814
SRR3591706second leaf4.383
SRR3591707mature leaf3.988
SRR3591708Shoot apex9.756
SRR3591709Stem11.184
SRR3591710White floral bud15.590
SRR3591711White flower9.436
SRR3591712Green floral bud30.324
SRR3591713Yellow flower8.711
SRP173429 SRR8316895Juvenile bud stage 15.885
SRR8316896Juvenile bud stage 30.138
SRR8316897Juvenile bud stage 16.521
SRR8316894Third green stage 13.522
SRR8316900Third green stage 32.231
SRR8316901Third green stage 35.104
SRR8316898Complete white stage 3.594
SRR8316899Complete white stage 16.603
SRR8316903Complete white stage 13.541
SRR8316902Silver flowering stage6.581
SRR8316904Silver flowering stage11.005
SRR8316905Silver flowering stage5.528
SRR8316906Gold flowering stage 16.232
SRR8316907Gold flowering stage 17.627
SRR8316908Gold flowering stage 16.510
SRP132670SRR6706286Control17.363
SRR6706287Light intensity 50%17.701
SRR6706288Light intensity 20%19.175
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.926
CNS0095593Slightly white alabastrum(diploid) 236.627
CNS0095594Slightly white alabastrum(diploid) 352.424
CNS0095595Whole white alabastrum(diploid) 237.517
CNS0095596Whole white alabastrum(diploid) 357.750
CNS0095597Whole white alabastrum(diploid) 452.496
CNS0095598Silvery flower (diploied) 115.551
CNS0095599Silvery flower (diploied) 216.500
CNS0095600Silvery flower (diploied) 316.410
CNS0095601Golden flower (diploid) 116.430
CNS0095602Golden flower (diploid) 212.707
CNS0095603Golden flower (diploid) 313.970
CNS0095604Slightly white alabastrum(tetraploid) 142.514
CNS0095605Slightly white alabastrum(tetraploid) 254.266
CNS0095606Slightly white alabastrum(tetraploid) 312.837
CNS0095607Whole white alabastrum(tetraploid) 147.425
CNS0095608Whole white alabastrum(tetraploid) 247.263
CNS0095609Whole white alabastrum(tetraploid) 331.062
CNS0095610Silvery flower (tetraploid) 117.622
CNS0095611Silvery flower (tetraploid) 214.517
CNS0095612Silvery flower (tetraploid) 325.123
CNS0095613Golden flower (tetraploid) 122.381
CNS0095614Golden flower (tetraploid) 223.495
CNS0095615Golden flower (tetraploid) 310.415
CRA001975CRR073297Stem 117.266
CRR073298Stem 216.550
CRR073299Stem 311.403
CRR073300Leaf 120.155
CRR073301Leaf 218.225
CRR073302Leaf 37.872
CRR073303Juvenile bud 116.353
CRR073304Juvenile bud 27.894
CRR073305Juvenile bud 315.529
CRR073306Third green 17.350
CRR073307Third green 24.062
CRR073308Third green 35.309
CRR073309Second white 17.452
CRR073310Second white 29.436
CRR073311Second white 310.646
CRR073312Silver flowering 16.415
CRR073313Silver flowering 25.866
CRR073314Silver flowering 35.817
CRR073315Gold flowering 18.838
CRR073316Gold flowering 210.417
CRR073317Gold flowering 36.013
CRR073318Tawny withering 115.088
CRR073319Tawny withering 223.492
CRR073320Tawny withering 311.297