Detail information of GWHGAAZE025077


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW71910.18.78114E-92hypothetical protein EUGRSUZ_E00370 [Eucalyptus grandis]
COGYP_008431664.14E-18hypothetical protein N186_01315
Swissprottr|Q9SEH3|RAD2C_ARATH3E-86Ras-related protein RABD2c
trEMBLtr|A0A059C1X4|A0A059C1X4_EUCGR3E-92Uncharacterized protein {ECO:0000313|EMBL:KCW71910.1}
TAIR10AT4G17530.19E-69RAB GTPase homolog 1C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5479954754801491-
GWHAAZE00000007mRNA5479954754801491-
GWHAAZE00000007exon5479954754799643-
GWHAAZE00000007exon5480051854800621-
GWHAAZE00000007exon5480073754800892-
GWHAAZE00000007exon5480135454801491-
GWHAAZE00000007CDS5480135454801491-
GWHAAZE00000007CDS5480073754800892-
GWHAAZE00000007CDS5480051854800621-
GWHAAZE00000007CDS5479954754799643-
Transcript Sequence

Network for GWHGAAZE025077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras211305.00E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.465
SRR3591706second leaf40.706
SRR3591707mature leaf32.886
SRR3591708Shoot apex50.443
SRR3591709Stem69.568
SRR3591710White floral bud89.777
SRR3591711White flower80.218
SRR3591712Green floral bud90.838
SRR3591713Yellow flower123.101
SRP173429 SRR8316895Juvenile bud stage 48.352
SRR8316896Juvenile bud stage 85.791
SRR8316897Juvenile bud stage 37.377
SRR8316894Third green stage 34.388
SRR8316900Third green stage 110.217
SRR8316901Third green stage 118.600
SRR8316898Complete white stage 57.439
SRR8316899Complete white stage 116.304
SRR8316903Complete white stage 82.354
SRR8316902Silver flowering stage61.266
SRR8316904Silver flowering stage74.107
SRR8316905Silver flowering stage33.538
SRR8316906Gold flowering stage 163.924
SRR8316907Gold flowering stage 167.684
SRR8316908Gold flowering stage 162.789
SRP132670SRR6706286Control65.464
SRR6706287Light intensity 50%72.025
SRR6706288Light intensity 20%78.760
CNP0000432CNS0095592Slightly white alabastrum(diploid) 184.028
CNS0095593Slightly white alabastrum(diploid) 279.751
CNS0095594Slightly white alabastrum(diploid) 383.356
CNS0095595Whole white alabastrum(diploid) 282.910
CNS0095596Whole white alabastrum(diploid) 391.105
CNS0095597Whole white alabastrum(diploid) 486.152
CNS0095598Silvery flower (diploied) 150.106
CNS0095599Silvery flower (diploied) 255.596
CNS0095600Silvery flower (diploied) 395.728
CNS0095601Golden flower (diploid) 152.342
CNS0095602Golden flower (diploid) 293.661
CNS0095603Golden flower (diploid) 392.944
CNS0095604Slightly white alabastrum(tetraploid) 1103.652
CNS0095605Slightly white alabastrum(tetraploid) 287.452
CNS0095606Slightly white alabastrum(tetraploid) 376.838
CNS0095607Whole white alabastrum(tetraploid) 197.962
CNS0095608Whole white alabastrum(tetraploid) 2109.272
CNS0095609Whole white alabastrum(tetraploid) 3107.688
CNS0095610Silvery flower (tetraploid) 196.451
CNS0095611Silvery flower (tetraploid) 285.730
CNS0095612Silvery flower (tetraploid) 3110.881
CNS0095613Golden flower (tetraploid) 1126.845
CNS0095614Golden flower (tetraploid) 2101.675
CNS0095615Golden flower (tetraploid) 3171.966
CRA001975CRR073297Stem 153.878
CRR073298Stem 254.131
CRR073299Stem 355.815
CRR073300Leaf 168.868
CRR073301Leaf 265.070
CRR073302Leaf 374.096
CRR073303Juvenile bud 179.781
CRR073304Juvenile bud 286.502
CRR073305Juvenile bud 364.541
CRR073306Third green 180.869
CRR073307Third green 292.659
CRR073308Third green 382.790
CRR073309Second white 185.671
CRR073310Second white 279.256
CRR073311Second white 375.382
CRR073312Silver flowering 1110.476
CRR073313Silver flowering 2122.436
CRR073314Silver flowering 3104.050
CRR073315Gold flowering 137.957
CRR073316Gold flowering 229.319
CRR073317Gold flowering 329.366
CRR073318Tawny withering 154.986
CRR073319Tawny withering 255.063
CRR073320Tawny withering 360.990