Gene detail

Detail information of GWHGAAZE025069

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273241.1	0	PREDICTED: serine/threonine-protein kinase D6PK [Vitis vinifera]
COG	YP_593054.1	4E-18	serine/threonin protein kinase
Swissprot	tr\|Q39183\|D6KL2_ARATH	0	Serine/threonine-protein kinase D6PKL2
trEMBL	tr\|A5BR54\|A5BR54_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79227.1}
TAIR10	AT2G44830.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54578110	54581281	-
GWHAAZE00000007	mRNA	54578110	54581281	-
GWHAAZE00000007	exon	54578110	54578998	-
GWHAAZE00000007	exon	54580032	54581281	-
GWHAAZE00000007	CDS	54580032	54581281	-
GWHAAZE00000007	CDS	54578110	54578998	-

Transcript Sequence
>GWHTAAZE025103 ATGGAAAGGGTACCTGAATCAAAAGCACTTCCCCGGCAGTTACCAGGCATGTCTAGGTCGTCCAATACTCATTTGACTTTGATAAGAGAAGATGCGAGTCAATACTACTCACGGGATTCCCAAGATTCACCCTCACTTGCACCTATTGGAACGTGGAAAGGGAAAAATTCTTTGCAAGAACACGAGGAACTTATGCACGATGTGCTTATGTTTAAGGGCAGTGGCGATTCATTGGAAGAAGGTGGCGGCCTTACCGCTTTCTCAGGGGCGAGTCACCCTCCTGAACCCGTTGATTCGGATCTGATGAGACTCGTTTGTGTACCCATCGGTCAAAATAAATCAGAGGGTAAATGCTTGGTGAAGAACTTGTCTATGAAGGGTCCTTTCCTAGATGATCTTTCGATTCGGGTTCCTGGAATAAAGCGCAGTTTATCTGTTCTTTCACCTTCAGATAGCTTGGTTGAAGAACCGACAGACTTGGGGGCAGTCTCCTCTCCATTTTCAGTGCCTCGCCCATCGCAAAATACCGAAACCTCTATCCTCCCTCCGGATTCCGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCTAGTGGCAATGTAAGTCCACTTAGTAGCATCGATAGTACTGGCATTGTTACGGCCATGAGCATTGTCAATAGCTGTACCAGCACGTATCGAAGTGACGGGATTATGAGTGATGGTATGCTTAGTTTTGAGCGAAACTACGAAAGCACAAAAGGAAGCGTACGAGGGGATTCGCTCGAGAGCGCAAAAACTAGCATGAGCCGAGCTAGTGATAGTAGTGGCCTAAGTGATGATAGTAATTGGAGTAACTTTACAGGCAGTGCTAATAAGCCTCACAAAGGGAATGATCCAAGGTGGAAGGCGATTCTTGCTATTCGAGCACGGGATGGAATCTTGGGAATGAGTCATTTTAGGTTACTCAAAAGGCTTGGGTGTGGTGATATTGGAAGTGTGTATCTATCGGAGCTGAGTGGGACCCATTGTTACTTTGCCATGAAAGTGATGGACAAGGCATCTCTTGCAAGTAGGAAGAAGTTGACCAGGGCTCAAACCGAGAGAGAGATCTTGCAGTTGCTAGACCACCCGTTCTTGCCGACTTTGTACACTAATTTTGAAACCGATAGATTCTCGTGTTTGGTTATGGAATATTGTCCAGGAGGTGATTTGCACACCTTGAGGCAAAGGCAACCTGGGAAACATTTTTCAGAGTACGCAGCGAGGTTTTATGCTGCAGAGGTACTGTTAGCGCTCGAGTATCTCCACATGCTAGGAGTTGTTTATAGGGACCTAAAACCCGAAAACATTCTGGTACGCGATGATGGCCACATAATGCTCTCGGACTTTGACCTCTCTTTAAGATGCGCAGTCTCACCGACCCTCATAAGAATCTCCGCATTTGATTCGGATCCATCCAAACGAGGCACTAACAGTGCATTCTGCGTTCAACCCGCCTGTATGGAGCCCACATCAGCATGCATCCAACCATCATGCTTCCTCCCAAGAATCTTCCCTCAGAAGTCCAAGAAAACCACCAGAAGGACCCGACCTGACTCATGCCCACAATCCGGCCCGCTTCCGGAGCTAGTTGCGGAGCCCACTTCCGCTCGGTCCATGTCATTTGTTGGGACTCACGAATACTTGGCCCCTGAAATCATCAAAGGAGAGGGACATGGGAGCGCAGTTGATTGGTGGACATTTGGCATTTTCTTACACGAATTACTATATGGTAAAACCCCATTTAAGGGGTCCGGGAACCGGGCTACACTTTTCAATGTGGTGGGTCAACAACTCCGGTTCCCAGACTCACCGGCTACGAGCTATGCGGCCAGAGATTTAATACGCGGTTTGCTGGTTAAAGAACCGCAGCACCGGCTTGGGGTCAAGAGGGGGGCTACTGAGATTAAACAGCACCCATTTTTCGAAGGGGTGAATTGGGCTTTAATACGGTGTAGCACCCCGCCAGAGGTGCCAAGGCCGGTGGAGGCGGAGCCTCCGTCTCCGGCGAAGTTCGGGGCAGTGGAGCCTGTGGGGATTGGAAGTACCAGTAAAAGGATGGTGGGAACAGAGGTGAAGTCTGGAGGTAAATATCTGGATTTTGAGTTCTTCTAG

Network for GWHGAAZE025069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	315	464	6.90E-37
PF00069.26	Pkinase	547	650	4.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.069
	SRR3591706	second leaf	17.875
	SRR3591707	mature leaf	6.899
	SRR3591708	Shoot apex	36.018
	SRR3591709	Stem	26.071
	SRR3591710	White floral bud	19.885
	SRR3591711	White flower	12.399
	SRR3591712	Green floral bud	34.506
	SRR3591713	Yellow flower	3.329
SRP173429	SRR8316895	Juvenile bud stage	17.864
	SRR8316896	Juvenile bud stage	19.363
	SRR8316897	Juvenile bud stage	7.661
	SRR8316894	Third green stage	7.421
	SRR8316900	Third green stage	23.328
	SRR8316901	Third green stage	24.068
	SRR8316898	Complete white stage	6.989
	SRR8316899	Complete white stage	32.309
	SRR8316903	Complete white stage	12.218
	SRR8316902	Silver flowering stage	6.360
	SRR8316904	Silver flowering stage	8.431
	SRR8316905	Silver flowering stage	4.034
	SRR8316906	Gold flowering stage	14.540
	SRR8316907	Gold flowering stage	11.570
	SRR8316908	Gold flowering stage	12.116
SRP132670	SRR6706286	Control	27.368
	SRR6706287	Light intensity 50%	28.059
	SRR6706288	Light intensity 20%	31.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.309
	CNS0095593	Slightly white alabastrum(diploid) 2	19.642
	CNS0095594	Slightly white alabastrum(diploid) 3	15.138
	CNS0095595	Whole white alabastrum(diploid) 2	15.900
	CNS0095596	Whole white alabastrum(diploid) 3	14.373
	CNS0095597	Whole white alabastrum(diploid) 4	14.088
	CNS0095598	Silvery flower (diploied) 1	18.690
	CNS0095599	Silvery flower (diploied) 2	15.139
	CNS0095600	Silvery flower (diploied) 3	12.903
	CNS0095601	Golden flower (diploid) 1	13.910
	CNS0095602	Golden flower (diploid) 2	11.545
	CNS0095603	Golden flower (diploid) 3	11.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.208
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.742
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.014
	CNS0095610	Silvery flower (tetraploid) 1	8.440
	CNS0095611	Silvery flower (tetraploid) 2	14.470
	CNS0095612	Silvery flower (tetraploid) 3	13.414
	CNS0095613	Golden flower (tetraploid) 1	2.630
	CNS0095614	Golden flower (tetraploid) 2	3.845
	CNS0095615	Golden flower (tetraploid) 3	2.249
CRA001975	CRR073297	Stem 1	57.870
	CRR073298	Stem 2	55.046
	CRR073299	Stem 3	72.235
	CRR073300	Leaf 1	66.988
	CRR073301	Leaf 2	64.568
	CRR073302	Leaf 3	65.430
	CRR073303	Juvenile bud 1	58.917
	CRR073304	Juvenile bud 2	73.404
	CRR073305	Juvenile bud 3	89.050
	CRR073306	Third green 1	50.165
	CRR073307	Third green 2	38.400
	CRR073308	Third green 3	42.162
	CRR073309	Second white 1	40.064
	CRR073310	Second white 2	24.066
	CRR073311	Second white 3	12.097
	CRR073312	Silver flowering 1	4.181
	CRR073313	Silver flowering 2	5.088
	CRR073314	Silver flowering 3	2.772
	CRR073315	Gold flowering 1	19.724
	CRR073316	Gold flowering 2	25.178
	CRR073317	Gold flowering 3	33.608
	CRR073318	Tawny withering 1	35.268
	CRR073319	Tawny withering 2	20.609
	CRR073320	Tawny withering 3	36.754