Gene detail

Detail information of GWHGAAZE025055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270954.2	0	PREDICTED: vacuolar protein sorting-associated protein 36-like [Vitis vinifera]
Swissprot	tr\|Q9FF81\|VPS36_ARATH	1E-174	Vacuolar protein sorting-associated protein 36
trEMBL	tr\|F6HIY9\|F6HIY9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52155.1}
TAIR10	AT5G04920.1	1E-134	EAP30/Vps36 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54370976	54378354	+
GWHAAZE00000007	mRNA	54370976	54378354	+
GWHAAZE00000007	exon	54370976	54371626	+
GWHAAZE00000007	exon	54372150	54372227	+
GWHAAZE00000007	exon	54373140	54373343	+
GWHAAZE00000007	exon	54374201	54374294	+
GWHAAZE00000007	exon	54374402	54374459	+
GWHAAZE00000007	exon	54374632	54374701	+
GWHAAZE00000007	exon	54375036	54375116	+
GWHAAZE00000007	exon	54376557	54376696	+
GWHAAZE00000007	exon	54376785	54376856	+
GWHAAZE00000007	exon	54377306	54377411	+
GWHAAZE00000007	exon	54378150	54378354	+
GWHAAZE00000007	CDS	54370976	54371626	+
GWHAAZE00000007	CDS	54372150	54372227	+
GWHAAZE00000007	CDS	54373140	54373343	+
GWHAAZE00000007	CDS	54374201	54374294	+
GWHAAZE00000007	CDS	54374402	54374459	+
GWHAAZE00000007	CDS	54374632	54374701	+
GWHAAZE00000007	CDS	54375036	54375116	+
GWHAAZE00000007	CDS	54376557	54376696	+
GWHAAZE00000007	CDS	54376785	54376856	+
GWHAAZE00000007	CDS	54377306	54377411	+
GWHAAZE00000007	CDS	54378150	54378218	+
GWHAAZE00000007	three_prime_UTR	54378219	54378354	+

Transcript Sequence
>GWHTAAZE025089 ATGGCCGCCGGAAAATGCCTCCAGCCGGCTGAACTCACCGCTTCCGGCCGCCCAATCCTCCACCCGGGCGAGATCGAATCCTCACTCCTTTCCTCCGTCGACATACTATCCGAAGAAAACCCTAACTTCCCTCATTTCAAGTCCGGCCTTCTAATTCTCACCACTCACCGCCTTTTATGGATATCCGAAACCCTAACTTCCCTCTCTACATCCACTGCCACGTCTGCAGCAGGCTCTATACCCCTCGCCGCCATAACTCACATATTCTCCTCCAAAAAATCAATCAAGTCGATGTTCGCGACCCCTAGGGTTCGTTTAATGGTGTCCACGACACTCGAAGGGGTAGTAGATGAGAAAGGGACTAAATCTATTGTACTTACAATTGTTCTGAGGGGGAAATCATCGGATCCGGATTCGTTTACGGCGAAGCTTTGGGAATGCTGGAGGGGGAGGGCATGGGAGGCTAAGGTTTCGGAGGGGCCAAGTAGCTCCAGGTCGGGTCAATTTGGGAGTGGTGACGGTGGGGCGAGTGGTGTAGCGATAAGAGTGCCGGTGGTTGGGGTGGCAGGGATACTGAGGAAGGAGCAGGAGATGTGGGAGAGTACTGATAAGAGCTTGCAGGATGCTTTTCAGGACTTGAATGCTCTCATGGATAAAAGTGTCAAAATTGTTGAGAGGTATTACTATCAAGGGGTGGAACTGGGGCTTGGCAGAGCAGGCTCTGACTTGAGTAAGGCTAAAGAGATGGTGATGCTAGCGGAGAAAATGAGGTTGAAACTTCTATCAGGCTCAAATAATCAAGCCAATGCGACAAATGATGAGGAGACACCATCCAAAGAAGAGATGCAAAATTTGTTATTAAGTGTTGGCATTGCATCTCCAGTCACAAAAGAATCGGCTGGCGCCTTGTATCACCAACAGTTGTCTCGCCAGTTGGCTGATTTTGTGAAAATTCCAATCGAGAGAGCAGGAGGAGTGATTAATCTTATTGATATTTATTGTCTCTTCAATCGGGCTCGTGGAACAGAATTGATTTCACCTGATGACTTGCTGCAAGCATGTAGTCTTTGGGAGAAGTTTGATGTTCCAGTTATGCTTCGGAAATTTGATAGTGGTGTAATGGTCATCCAGAATAAGTCACATAGCGACGATGAGTATGTGAATGGTGGTTATGCCACACATGACTACGAATTGCAAGGTTATTTTCTGAAAAGCAGACTTTATCTTGTGGAAAAGGTTTTTGCAAGAATTAAAACCCTAGTACTAAAGCCTGATGCCCTTTGGACTGGGATTAGTGCTAGTGATGCTGCAATGACTTTGGGGATCGCCCCAGCTATGGCCAAAGAGCATCTTCTGACAGCCGAGAGCAAAGGCATAGATGTCAGCCCTGATGGTTTTCGCTTTTATGTCAACCTATTTCAAGAAATTGACCCAGCTGCTTTGTACTCAGTAAAAGATCATGGGATTTATGCTTCATGGATTGGTGCTGCCTTTGCTTCTTTTTCTAGGTTAGAAGAATGCTGTAGCAGCCGGTTCATTTATTTATTTATCAAGGTGAAGGTGGATAAGCTTCTCAAGGAGTTAAAAAATGCGCAATGCCGGGTTTCACATGTATTTGTTTGATTCCACAAATTTTATCCACTGTAACATACAAATTGTTGAGTCACTTTGTAAATCCCCTTTTTTGGAGTTTCACATTAAAATTAATAATTTTAATTTAATACATTATTGCAAAGAGACTTGTATTTGAGATTAATTT

Network for GWHGAAZE025055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11605.9	Vps36_ESCRT-II	11	107	2.30E-09
PF04157.17	EAP30	243	459	1.40E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12190	VPS36, EAP45	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032266	molecular_function	phosphatidylinositol-3-phosphate binding
GO:0043130	molecular_function	ubiquitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.282
	SRR3591706	second leaf	18.549
	SRR3591707	mature leaf	12.651
	SRR3591708	Shoot apex	26.423
	SRR3591709	Stem	29.957
	SRR3591710	White floral bud	24.867
	SRR3591711	White flower	24.519
	SRR3591712	Green floral bud	24.502
	SRR3591713	Yellow flower	22.221
SRP173429	SRR8316895	Juvenile bud stage	14.247
	SRR8316896	Juvenile bud stage	20.554
	SRR8316897	Juvenile bud stage	10.140
	SRR8316894	Third green stage	8.988
	SRR8316900	Third green stage	25.013
	SRR8316901	Third green stage	22.634
	SRR8316898	Complete white stage	10.096
	SRR8316899	Complete white stage	32.902
	SRR8316903	Complete white stage	14.298
	SRR8316902	Silver flowering stage	8.717
	SRR8316904	Silver flowering stage	11.789
	SRR8316905	Silver flowering stage	6.417
	SRR8316906	Gold flowering stage	21.354
	SRR8316907	Gold flowering stage	19.913
	SRR8316908	Gold flowering stage	19.939
SRP132670	SRR6706286	Control	30.675
	SRR6706287	Light intensity 50%	30.820
	SRR6706288	Light intensity 20%	30.472
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.281
	CNS0095593	Slightly white alabastrum(diploid) 2	22.082
	CNS0095594	Slightly white alabastrum(diploid) 3	20.239
	CNS0095595	Whole white alabastrum(diploid) 2	19.469
	CNS0095596	Whole white alabastrum(diploid) 3	16.955
	CNS0095597	Whole white alabastrum(diploid) 4	17.675
	CNS0095598	Silvery flower (diploied) 1	16.358
	CNS0095599	Silvery flower (diploied) 2	17.118
	CNS0095600	Silvery flower (diploied) 3	20.636
	CNS0095601	Golden flower (diploid) 1	12.723
	CNS0095602	Golden flower (diploid) 2	18.561
	CNS0095603	Golden flower (diploid) 3	18.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.934
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.751
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.914
	CNS0095610	Silvery flower (tetraploid) 1	25.503
	CNS0095611	Silvery flower (tetraploid) 2	23.362
	CNS0095612	Silvery flower (tetraploid) 3	21.269
	CNS0095613	Golden flower (tetraploid) 1	14.806
	CNS0095614	Golden flower (tetraploid) 2	22.015
	CNS0095615	Golden flower (tetraploid) 3	15.636
CRA001975	CRR073297	Stem 1	18.843
	CRR073298	Stem 2	15.994
	CRR073299	Stem 3	17.168
	CRR073300	Leaf 1	20.564
	CRR073301	Leaf 2	19.587
	CRR073302	Leaf 3	19.280
	CRR073303	Juvenile bud 1	18.228
	CRR073304	Juvenile bud 2	15.800
	CRR073305	Juvenile bud 3	17.713
	CRR073306	Third green 1	7.249
	CRR073307	Third green 2	8.005
	CRR073308	Third green 3	7.353
	CRR073309	Second white 1	6.302
	CRR073310	Second white 2	8.427
	CRR073311	Second white 3	6.075
	CRR073312	Silver flowering 1	6.452
	CRR073313	Silver flowering 2	6.143
	CRR073314	Silver flowering 3	5.390
	CRR073315	Gold flowering 1	5.270
	CRR073316	Gold flowering 2	9.641
	CRR073317	Gold flowering 3	7.309
	CRR073318	Tawny withering 1	17.579
	CRR073319	Tawny withering 2	8.682
	CRR073320	Tawny withering 3	14.032