Detail information of GWHGAAZE025038


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006357715.11.06649E-75PREDICTED: WD repeat-containing protein DWA1-like [Solanum tuberosum]
COGYP_003899727.10.000002WD40 repeat-containing protein
Swissprottr|Q8L4M1|THOC6_ARATH6E-50THO complex subunit 6
trEMBLtr|D7TCM6|D7TCM6_VITVI6E-76Putative uncharacterized protein {ECO:0000313|EMBL:CBI27884.3}
TAIR10AT2G19430.16E-42DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5402328854023821-
GWHAAZE00000007mRNA5402328854023821-
GWHAAZE00000007exon5402361354023821-
GWHAAZE00000007exon5402328854023543-
GWHAAZE00000007CDS5402361354023821-
GWHAAZE00000007CDS5402328854023543-
Transcript Sequence

Network for GWHGAAZE025038

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402353.90E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K13175THOC6 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.802
SRR3591706second leaf4.167
SRR3591707mature leaf4.332
SRR3591708Shoot apex7.716
SRR3591709Stem10.983
SRR3591710White floral bud7.294
SRR3591711White flower9.717
SRR3591712Green floral bud10.361
SRR3591713Yellow flower8.296
SRP173429 SRR8316895Juvenile bud stage 2.642
SRR8316896Juvenile bud stage 3.952
SRR8316897Juvenile bud stage 1.242
SRR8316894Third green stage 1.195
SRR8316900Third green stage 3.286
SRR8316901Third green stage 2.632
SRR8316898Complete white stage 0.585
SRR8316899Complete white stage 4.168
SRR8316903Complete white stage 1.285
SRR8316902Silver flowering stage0.731
SRR8316904Silver flowering stage1.485
SRR8316905Silver flowering stage0.648
SRR8316906Gold flowering stage 2.283
SRR8316907Gold flowering stage 2.542
SRR8316908Gold flowering stage 3.009
SRP132670SRR6706286Control0.683
SRR6706287Light intensity 50%0.855
SRR6706288Light intensity 20%1.324
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.646
CNS0095593Slightly white alabastrum(diploid) 21.306
CNS0095594Slightly white alabastrum(diploid) 31.355
CNS0095595Whole white alabastrum(diploid) 23.644
CNS0095596Whole white alabastrum(diploid) 32.774
CNS0095597Whole white alabastrum(diploid) 41.785
CNS0095598Silvery flower (diploied) 14.729
CNS0095599Silvery flower (diploied) 21.742
CNS0095600Silvery flower (diploied) 32.106
CNS0095601Golden flower (diploid) 14.246
CNS0095602Golden flower (diploid) 23.261
CNS0095603Golden flower (diploid) 33.854
CNS0095604Slightly white alabastrum(tetraploid) 13.069
CNS0095605Slightly white alabastrum(tetraploid) 21.686
CNS0095606Slightly white alabastrum(tetraploid) 35.472
CNS0095607Whole white alabastrum(tetraploid) 12.254
CNS0095608Whole white alabastrum(tetraploid) 21.542
CNS0095609Whole white alabastrum(tetraploid) 31.352
CNS0095610Silvery flower (tetraploid) 11.913
CNS0095611Silvery flower (tetraploid) 23.729
CNS0095612Silvery flower (tetraploid) 31.690
CNS0095613Golden flower (tetraploid) 11.944
CNS0095614Golden flower (tetraploid) 21.349
CNS0095615Golden flower (tetraploid) 34.013
CRA001975CRR073297Stem 12.415
CRR073298Stem 22.825
CRR073299Stem 30.758
CRR073300Leaf 10.911
CRR073301Leaf 21.224
CRR073302Leaf 30.818
CRR073303Juvenile bud 10.638
CRR073304Juvenile bud 20.608
CRR073305Juvenile bud 31.521
CRR073306Third green 10.000
CRR073307Third green 20.201
CRR073308Third green 30.000
CRR073309Second white 10.046
CRR073310Second white 20.075
CRR073311Second white 30.338
CRR073312Silver flowering 10.270
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.409
CRR073315Gold flowering 10.203
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.461
CRR073319Tawny withering 20.817
CRR073320Tawny withering 32.359