Detail information of GWHGAAZE025031


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011090124.10PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X1 [Sesamum indicum]
trEMBLtr|A0A068UME7|A0A068UME7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09482.1}
TAIR10AT1G02080.10transcription regulators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5383471653851482-
GWHAAZE00000007mRNA5383471653851482-
GWHAAZE00000007exon5383471653834862-
GWHAAZE00000007exon5383497153835072-
GWHAAZE00000007exon5383617653836415-
GWHAAZE00000007exon5383794453838078-
GWHAAZE00000007exon5383820653838310-
GWHAAZE00000007exon5383942553839616-
GWHAAZE00000007exon5384000853840161-
GWHAAZE00000007exon5384141553841476-
GWHAAZE00000007exon5384163353841779-
GWHAAZE00000007exon5384185753841904-
GWHAAZE00000007exon5384200553842139-
GWHAAZE00000007exon5384249153842637-
GWHAAZE00000007exon5384316953843249-
GWHAAZE00000007exon5384352153843601-
GWHAAZE00000007exon5384447253844572-
GWHAAZE00000007exon5384465353844779-
GWHAAZE00000007exon5384800053848116-
GWHAAZE00000007exon5384819053848267-
GWHAAZE00000007exon5384846053848504-
GWHAAZE00000007exon5384943253849557-
GWHAAZE00000007exon5384967953849814-
GWHAAZE00000007exon5385037153850520-
GWHAAZE00000007exon5385060253850612-
GWHAAZE00000007exon5385119953851381-
GWHAAZE00000007exon5385147753851482-
GWHAAZE00000007CDS5385147753851482-
GWHAAZE00000007CDS5385119953851381-
GWHAAZE00000007CDS5385060253850612-
GWHAAZE00000007CDS5385037153850520-
GWHAAZE00000007CDS5384967953849814-
GWHAAZE00000007CDS5384943253849557-
GWHAAZE00000007CDS5384846053848504-
GWHAAZE00000007CDS5384819053848267-
GWHAAZE00000007CDS5384800053848116-
GWHAAZE00000007CDS5384465353844779-
GWHAAZE00000007CDS5384447253844572-
GWHAAZE00000007CDS5384352153843601-
GWHAAZE00000007CDS5384316953843249-
GWHAAZE00000007CDS5384249153842637-
GWHAAZE00000007CDS5384200553842139-
GWHAAZE00000007CDS5384185753841904-
GWHAAZE00000007CDS5384163353841779-
GWHAAZE00000007CDS5384141553841476-
GWHAAZE00000007CDS5384000853840161-
GWHAAZE00000007CDS5383942553839616-
GWHAAZE00000007CDS5383820653838310-
GWHAAZE00000007CDS5383794453838078-
GWHAAZE00000007CDS5383617653836415-
GWHAAZE00000007CDS5383497153835072-
GWHAAZE00000007CDS5383471653834862-
Transcript Sequence

Network for GWHGAAZE025031

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04054.16Not15669287.60E-150
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12604CNOT1, NOT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.676
SRR3591706second leaf4.648
SRR3591707mature leaf3.705
SRR3591708Shoot apex11.186
SRR3591709Stem11.749
SRR3591710White floral bud12.274
SRR3591711White flower12.053
SRR3591712Green floral bud13.151
SRR3591713Yellow flower5.163
SRP173429 SRR8316895Juvenile bud stage 13.680
SRR8316896Juvenile bud stage 18.867
SRR8316897Juvenile bud stage 8.971
SRR8316894Third green stage 6.835
SRR8316900Third green stage 14.133
SRR8316901Third green stage 13.155
SRR8316898Complete white stage 3.601
SRR8316899Complete white stage 9.728
SRR8316903Complete white stage 9.379
SRR8316902Silver flowering stage3.815
SRR8316904Silver flowering stage6.431
SRR8316905Silver flowering stage2.349
SRR8316906Gold flowering stage 4.168
SRR8316907Gold flowering stage 5.360
SRR8316908Gold flowering stage 5.287
SRP132670SRR6706286Control10.074
SRR6706287Light intensity 50%12.037
SRR6706288Light intensity 20%13.115
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.104
CNS0095593Slightly white alabastrum(diploid) 210.870
CNS0095594Slightly white alabastrum(diploid) 310.366
CNS0095595Whole white alabastrum(diploid) 28.192
CNS0095596Whole white alabastrum(diploid) 37.930
CNS0095597Whole white alabastrum(diploid) 48.316
CNS0095598Silvery flower (diploied) 111.640
CNS0095599Silvery flower (diploied) 29.346
CNS0095600Silvery flower (diploied) 37.821
CNS0095601Golden flower (diploid) 111.406
CNS0095602Golden flower (diploid) 210.669
CNS0095603Golden flower (diploid) 310.133
CNS0095604Slightly white alabastrum(tetraploid) 110.373
CNS0095605Slightly white alabastrum(tetraploid) 26.921
CNS0095606Slightly white alabastrum(tetraploid) 316.242
CNS0095607Whole white alabastrum(tetraploid) 16.633
CNS0095608Whole white alabastrum(tetraploid) 24.275
CNS0095609Whole white alabastrum(tetraploid) 38.811
CNS0095610Silvery flower (tetraploid) 18.656
CNS0095611Silvery flower (tetraploid) 210.268
CNS0095612Silvery flower (tetraploid) 38.239
CNS0095613Golden flower (tetraploid) 14.186
CNS0095614Golden flower (tetraploid) 25.971
CNS0095615Golden flower (tetraploid) 35.421
CRA001975CRR073297Stem 117.623
CRR073298Stem 214.722
CRR073299Stem 38.391
CRR073300Leaf 116.959
CRR073301Leaf 217.378
CRR073302Leaf 35.739
CRR073303Juvenile bud 18.220
CRR073304Juvenile bud 23.710
CRR073305Juvenile bud 311.750
CRR073306Third green 13.638
CRR073307Third green 22.868
CRR073308Third green 34.562
CRR073309Second white 11.393
CRR073310Second white 21.544
CRR073311Second white 31.444
CRR073312Silver flowering 10.923
CRR073313Silver flowering 20.692
CRR073314Silver flowering 31.103
CRR073315Gold flowering 10.690
CRR073316Gold flowering 23.274
CRR073317Gold flowering 30.988
CRR073318Tawny withering 18.257
CRR073319Tawny withering 29.833
CRR073320Tawny withering 37.323