Detail information of GWHGAAZE025014


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09504.10unnamed protein product [Coffea canephora]
Swissprottr|O81316|SCL6_ARATH3E-148Scarecrow-like protein 6
trEMBLtr|A0A068UMM3|A0A068UMM3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09504.1}
TAIR10AT4G00150.14E-122GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5352761853528703+
GWHAAZE00000007mRNA5352761853528703+
GWHAAZE00000007exon5352761853528703+
GWHAAZE00000007CDS5352761853528703+
Transcript Sequence

Network for GWHGAAZE025014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS53603.80E-95
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.237
SRR3591706second leaf17.276
SRR3591707mature leaf23.655
SRR3591708Shoot apex15.588
SRR3591709Stem31.182
SRR3591710White floral bud42.389
SRR3591711White flower52.427
SRR3591712Green floral bud17.467
SRR3591713Yellow flower19.524
SRP173429 SRR8316895Juvenile bud stage 4.793
SRR8316896Juvenile bud stage 4.379
SRR8316897Juvenile bud stage 1.151
SRR8316894Third green stage 3.456
SRR8316900Third green stage 9.104
SRR8316901Third green stage 5.838
SRR8316898Complete white stage 16.360
SRR8316899Complete white stage 16.678
SRR8316903Complete white stage 27.693
SRR8316902Silver flowering stage10.506
SRR8316904Silver flowering stage18.278
SRR8316905Silver flowering stage7.075
SRR8316906Gold flowering stage 16.997
SRR8316907Gold flowering stage 16.425
SRR8316908Gold flowering stage 19.436
SRP132670SRR6706286Control8.078
SRR6706287Light intensity 50%8.788
SRR6706288Light intensity 20%9.105
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.281
CNS0095593Slightly white alabastrum(diploid) 29.554
CNS0095594Slightly white alabastrum(diploid) 38.044
CNS0095595Whole white alabastrum(diploid) 27.593
CNS0095596Whole white alabastrum(diploid) 34.814
CNS0095597Whole white alabastrum(diploid) 410.461
CNS0095598Silvery flower (diploied) 117.048
CNS0095599Silvery flower (diploied) 214.492
CNS0095600Silvery flower (diploied) 317.505
CNS0095601Golden flower (diploid) 111.164
CNS0095602Golden flower (diploid) 212.768
CNS0095603Golden flower (diploid) 311.914
CNS0095604Slightly white alabastrum(tetraploid) 111.281
CNS0095605Slightly white alabastrum(tetraploid) 211.543
CNS0095606Slightly white alabastrum(tetraploid) 315.832
CNS0095607Whole white alabastrum(tetraploid) 19.486
CNS0095608Whole white alabastrum(tetraploid) 27.564
CNS0095609Whole white alabastrum(tetraploid) 34.845
CNS0095610Silvery flower (tetraploid) 115.158
CNS0095611Silvery flower (tetraploid) 214.863
CNS0095612Silvery flower (tetraploid) 357.077
CNS0095613Golden flower (tetraploid) 18.304
CNS0095614Golden flower (tetraploid) 211.139
CNS0095615Golden flower (tetraploid) 313.130
CRA001975CRR073297Stem 16.194
CRR073298Stem 25.744
CRR073299Stem 39.465
CRR073300Leaf 18.657
CRR073301Leaf 29.505
CRR073302Leaf 36.726
CRR073303Juvenile bud 111.933
CRR073304Juvenile bud 210.580
CRR073305Juvenile bud 316.297
CRR073306Third green 137.889
CRR073307Third green 242.042
CRR073308Third green 343.349
CRR073309Second white 121.996
CRR073310Second white 232.992
CRR073311Second white 331.574
CRR073312Silver flowering 117.937
CRR073313Silver flowering 213.141
CRR073314Silver flowering 311.796
CRR073315Gold flowering 114.618
CRR073316Gold flowering 220.033
CRR073317Gold flowering 314.128
CRR073318Tawny withering 115.032
CRR073319Tawny withering 219.235
CRR073320Tawny withering 316.099