Detail information of GWHGAAZE025004


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010088880.19.13755E-52hypothetical protein L484_020868 [Morus notabilis]
Swissprottr|P33080|AX10A_SOYBN8E-16Auxin-induced protein X10A
trEMBLtr|W9R2M9|W9R2M9_9ROSA3E-52Uncharacterized protein {ECO:0000313|EMBL:EXB37077.1}
TAIR10AT3G60690.12E-30SAUR-like auxin-responsive protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5331985453320303-
GWHAAZE00000007mRNA5331985453320303-
GWHAAZE00000007exon5331985453320303-
GWHAAZE00000007CDS5331985453320303-
Transcript Sequence

Network for GWHGAAZE025004

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02519.15Auxin_inducible681333.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14488SAUR Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0009733biological_processresponse to auxin

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE025004.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.592
SRR3591706second leaf13.485
SRR3591707mature leaf93.298
SRR3591708Shoot apex2.435
SRR3591709Stem15.911
SRR3591710White floral bud19.939
SRR3591711White flower42.202
SRR3591712Green floral bud8.033
SRR3591713Yellow flower48.498
SRP173429 SRR8316895Juvenile bud stage 1.313
SRR8316896Juvenile bud stage 2.730
SRR8316897Juvenile bud stage 0.506
SRR8316894Third green stage 0.681
SRR8316900Third green stage 2.465
SRR8316901Third green stage 3.212
SRR8316898Complete white stage 1.802
SRR8316899Complete white stage 3.180
SRR8316903Complete white stage 3.966
SRR8316902Silver flowering stage2.815
SRR8316904Silver flowering stage5.436
SRR8316905Silver flowering stage3.623
SRR8316906Gold flowering stage 11.424
SRR8316907Gold flowering stage 10.397
SRR8316908Gold flowering stage 13.460
SRP132670SRR6706286Control1.057
SRR6706287Light intensity 50%0.953
SRR6706288Light intensity 20%1.031
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.905
CNS0095593Slightly white alabastrum(diploid) 24.209
CNS0095594Slightly white alabastrum(diploid) 35.479
CNS0095595Whole white alabastrum(diploid) 22.964
CNS0095596Whole white alabastrum(diploid) 31.979
CNS0095597Whole white alabastrum(diploid) 43.239
CNS0095598Silvery flower (diploied) 116.419
CNS0095599Silvery flower (diploied) 215.431
CNS0095600Silvery flower (diploied) 310.424
CNS0095601Golden flower (diploid) 129.139
CNS0095602Golden flower (diploid) 226.993
CNS0095603Golden flower (diploid) 325.272
CNS0095604Slightly white alabastrum(tetraploid) 12.499
CNS0095605Slightly white alabastrum(tetraploid) 22.514
CNS0095606Slightly white alabastrum(tetraploid) 31.379
CNS0095607Whole white alabastrum(tetraploid) 11.447
CNS0095608Whole white alabastrum(tetraploid) 21.171
CNS0095609Whole white alabastrum(tetraploid) 31.537
CNS0095610Silvery flower (tetraploid) 116.012
CNS0095611Silvery flower (tetraploid) 29.054
CNS0095612Silvery flower (tetraploid) 32.615
CNS0095613Golden flower (tetraploid) 129.070
CNS0095614Golden flower (tetraploid) 229.814
CNS0095615Golden flower (tetraploid) 320.769
CRA001975CRR073297Stem 11.729
CRR073298Stem 21.937
CRR073299Stem 31.465
CRR073300Leaf 13.408
CRR073301Leaf 23.055
CRR073302Leaf 32.316
CRR073303Juvenile bud 12.766
CRR073304Juvenile bud 22.746
CRR073305Juvenile bud 33.210
CRR073306Third green 10.459
CRR073307Third green 21.089
CRR073308Third green 31.353
CRR073309Second white 10.357
CRR073310Second white 21.393
CRR073311Second white 31.106
CRR073312Silver flowering 12.177
CRR073313Silver flowering 22.778
CRR073314Silver flowering 33.146
CRR073315Gold flowering 110.031
CRR073316Gold flowering 212.546
CRR073317Gold flowering 311.638
CRR073318Tawny withering 139.758
CRR073319Tawny withering 217.410
CRR073320Tawny withering 320.795