Gene detail

Detail information of GWHGAAZE024989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280748.1	0	PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera]
COG	YP_004457956.1	6E-41	DNA repair and recombination protein RadA
Swissprot	tr\|Q8GXF0\|RA51C_ARATH	4E-164	DNA repair protein RAD51 homolog 3
trEMBL	tr\|D7U7X0\|D7U7X0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38899.3}
TAIR10	AT2G45280.2	2E-130	RAS associated with diabetes protein 51C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53094387	53098534	-
GWHAAZE00000007	mRNA	53094387	53098534	-
GWHAAZE00000007	exon	53094387	53094562	-
GWHAAZE00000007	exon	53095019	53095085	-
GWHAAZE00000007	exon	53095871	53096002	-
GWHAAZE00000007	exon	53096111	53096340	-
GWHAAZE00000007	exon	53096895	53096965	-
GWHAAZE00000007	exon	53097048	53097081	-
GWHAAZE00000007	exon	53097239	53097361	-
GWHAAZE00000007	exon	53098346	53098447	-
GWHAAZE00000007	exon	53098507	53098534	-
GWHAAZE00000007	CDS	53098507	53098534	-
GWHAAZE00000007	CDS	53098346	53098447	-
GWHAAZE00000007	CDS	53097239	53097361	-
GWHAAZE00000007	CDS	53097048	53097081	-
GWHAAZE00000007	CDS	53096895	53096965	-
GWHAAZE00000007	CDS	53096111	53096340	-
GWHAAZE00000007	CDS	53095871	53096002	-
GWHAAZE00000007	CDS	53095019	53095085	-
GWHAAZE00000007	CDS	53094387	53094562	-

Transcript Sequence
>GWHTAAZE025023 ATGAATCTTTGTAGCATTTGTATTGGTGTAGAACTGAAAATATCCGACAATGAAGCACTTGAAATTCTGAAGGCAGCATCACATGGCAGTAGACTGGACGGCACTGGTGGAAGTCATGCCATTGTCAATGGTGCACAAACTGCTTGGGACATGCTCCATGAGGAGGACCTTTTAACGCACATTACAACATCGTGTGCAGATTTAGATAACATCCTTGGCGGAGGAATTAATTGCAATGAAGTTACTGAAATTGGTGGAGTACCAGGCATTGGCAAAACGCAATTGGGGATTCAACTTGCAGTTAATGTTCAAATTCCAGTTGAATGTGGTGGGCTTGGAGGCAAGGCAATTTATATAGATACCGAAGGCAGCTTTATGGTGGAACGTGCTTTGCAAATTGCAGAAGCATGTGTAGAAGACATGTTAGAATATAATGGCTTGCATCGGAAGGAATTTCAAGCTTGCCAAGATAAGATTATGCAGCCCAAAGATTTCCTTGGAAATATTTTCTATTTCCGTATCTGTAGTTACACAGAGCAAATTGCCATTATAAACTACTTAGAGAAGTTCATCTCTGAGCATAAAGATGTTAAGGTTATTATCATTGATAGTATTACATTTCATTTCCGTCAAGATTTTGATGATATGGCTCTTAGAACTCGACTACTCAGTGGAATGGCCTTAAAGTTGATGAAAGTTGCAAAAACGTTCAGCTTGGCAGTGGTTCTACTAAATCAGGTGACTACTAAGTATTCAGAAGGCTCATTCCATTTAACTCTGGCACTAGGTGATAGTTGGTCACACGCTTGTACCAATCGAGTAATTTTGTACTGGAATGGGAATGAACGGCACGCATATATTGACAAGTCCCCGTCCCTCAGGTCAGCATCCTCACCGTATTCTGTGACAGCTAAAGGTATACGAAATTTAGCCTCAAACTCTAAGCGAATCAAAATGATGTAA

Network for GWHGAAZE024989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08423.12	Rad51	44	308	1.00E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10870	RAD51L2, RAD51C	Homologous recombination	map03440
K10870	RAD51L2, RAD51C	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0008094	molecular_function	DNA-dependent ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.992
	SRR3591706	second leaf	1.337
	SRR3591707	mature leaf	0.531
	SRR3591708	Shoot apex	7.535
	SRR3591709	Stem	3.675
	SRR3591710	White floral bud	5.153
	SRR3591711	White flower	1.087
	SRR3591712	Green floral bud	5.547
	SRR3591713	Yellow flower	0.609
SRP173429	SRR8316895	Juvenile bud stage	2.187
	SRR8316896	Juvenile bud stage	3.313
	SRR8316897	Juvenile bud stage	1.790
	SRR8316894	Third green stage	0.935
	SRR8316900	Third green stage	2.758
	SRR8316901	Third green stage	2.668
	SRR8316898	Complete white stage	0.348
	SRR8316899	Complete white stage	1.726
	SRR8316903	Complete white stage	0.794
	SRR8316902	Silver flowering stage	0.149
	SRR8316904	Silver flowering stage	0.404
	SRR8316905	Silver flowering stage	0.293
	SRR8316906	Gold flowering stage	0.367
	SRR8316907	Gold flowering stage	0.858
	SRR8316908	Gold flowering stage	0.546
SRP132670	SRR6706286	Control	2.128
	SRR6706287	Light intensity 50%	1.519
	SRR6706288	Light intensity 20%	2.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.091
	CNS0095593	Slightly white alabastrum(diploid) 2	2.856
	CNS0095594	Slightly white alabastrum(diploid) 3	4.219
	CNS0095595	Whole white alabastrum(diploid) 2	3.855
	CNS0095596	Whole white alabastrum(diploid) 3	5.339
	CNS0095597	Whole white alabastrum(diploid) 4	4.403
	CNS0095598	Silvery flower (diploied) 1	1.190
	CNS0095599	Silvery flower (diploied) 2	1.879
	CNS0095600	Silvery flower (diploied) 3	0.610
	CNS0095601	Golden flower (diploid) 1	1.017
	CNS0095602	Golden flower (diploid) 2	0.705
	CNS0095603	Golden flower (diploid) 3	0.709
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.658
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.345
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.926
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.925
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.124
	CNS0095612	Silvery flower (tetraploid) 3	0.206
	CNS0095613	Golden flower (tetraploid) 1	0.032
	CNS0095614	Golden flower (tetraploid) 2	0.106
	CNS0095615	Golden flower (tetraploid) 3	0.168
CRA001975	CRR073297	Stem 1	1.664
	CRR073298	Stem 2	1.420
	CRR073299	Stem 3	0.748
	CRR073300	Leaf 1	1.608
	CRR073301	Leaf 2	1.635
	CRR073302	Leaf 3	0.991
	CRR073303	Juvenile bud 1	1.784
	CRR073304	Juvenile bud 2	0.616
	CRR073305	Juvenile bud 3	0.590
	CRR073306	Third green 1	0.341
	CRR073307	Third green 2	0.244
	CRR073308	Third green 3	0.141
	CRR073309	Second white 1	0.089
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.167
	CRR073313	Silver flowering 2	0.081
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.357
	CRR073316	Gold flowering 2	0.290
	CRR073317	Gold flowering 3	0.613
	CRR073318	Tawny withering 1	2.914
	CRR073319	Tawny withering 2	2.114
	CRR073320	Tawny withering 3	0.978