Gene detail

Detail information of GWHGAAZE024981

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004229807.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Solanum lycopersicum]
COG	YP_001192956.1	3E-30	two component regulator
Swissprot	tr\|Q9LYN8\|EXS_ARATH	6E-68	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|K4AZ63\|K4AZ63_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g091230.2.1}
TAIR10	AT2G45340.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53006267	53010520	-
GWHAAZE00000007	mRNA	53006267	53010520	-
GWHAAZE00000007	exon	53006267	53006730	-
GWHAAZE00000007	exon	53007256	53008128	-
GWHAAZE00000007	exon	53008740	53009000	-
GWHAAZE00000007	exon	53010076	53010520	-
GWHAAZE00000007	CDS	53010076	53010520	-
GWHAAZE00000007	CDS	53008740	53009000	-
GWHAAZE00000007	CDS	53007256	53008128	-
GWHAAZE00000007	CDS	53006267	53006730	-

Transcript Sequence
>GWHTAAZE025015 ATGGGTCCCTTCTCTCTCCTCTTCTCCATTTTCGTGCTTCTACTCACATACCCACTTCATTCTCTCTCCCAAACCACCTCCAGCGACGGCGAGCTGCCACTCCTCATGGCCTTAAAAGCCTCTTTGGACCCAAAAGGCCTAATTCTCTCCTCTTGGTCTCCAAATGCCACTAATCCCTGTGATGGGTCCTTTCTGGGTATTGCTTGCAATGAGAGAGGCAAAGTGGTAAATATTTCACTTCAGGGTAAAGAGCTCGCCGGAAAAATACCGCCGGAGATTGGCCTGATCAAGAGCTTATCTGGGTTGTACCTGCATTTCAACCAGCTGTACGGGGTTGTACCGAAGGAGATAGCTAACTTAACTGAGCTCTCTGATTTGTATCTCAATGTCAATAATCTTTCTGGTGAAATACCTCTTGAGATTGGGAATATGTCTAATCTCCAAGTTTTGCAACTCTGTTACAATAAGTTGACTGGAAGCATACCAACTCAGCTTGGGTCTTTGAAGAAGCTTACCGTTCTTGCTTTACAATACAATCAATTGACGGGTGCCATTCCTGCTAGTTTGGGGGATTTGATGATGCTAACGAGGTTGGATTTGAGCTTCAATCACTTTTTTGGTTCGATTCCAACCAAATTGACCGACCCACCAGTACTTGAAGTTCTAGACATCCGAAATAATACTCTCTCCGGCAGAGTTCCTATAGATTTGAAGAGACTTGACAACGGATTCCAGTATGAAAACAATCCGGGCTTATGTGGAGTCGGTTTTTCTTCCTTGAAAATGTGCACTTCTGATTCTCCAAACCCAAATAAACCTGAACCATTTGCACCAACCTTCAAAGGCCTTGAGCCAAAAGACATCCCTGAGTCCGCAAATATCAAACCAAATTGCGGTCACACTCGTTGCTCAAACCATTCTAGAACCCCATTAGTTGCTGCTATATTTGGAGCCGTTATAGTTGTTTCATTAGTAGTTTTTGTACTTTTCGTATTCTCATGGTACCGTCGGCGAAAGCAGAAGATTGGAAGTGCTTTCGACACTTCTGATAATCGTCTTAGTACGGACCAAGTCAAAGAAGTTTATAATAGGAAGAGTGCTTCGCCTCTCATTAGCCTCGAGTATTCAAATGGATGGGACCCTTTGGCTAAAAATTGTCCAAGAGGAGACGGGTTTTCACAAGAATTCTTTGAGAGCTTTATGTTCAATGTGGATGATGTGGAGTCTGCTACCCAATACTTTTCGGAGGCGAATTTGTTGGGAAAGAGTGGGTTTTCAGCTACCTATAAAGGAATTTTGAGGGACGGGTCGGTTGTGGCTATTAAGTGCATTGCTAAGACGAGTTGTAAGTCCGATGAGGCCGAGTTCTTGAAAGGATTGAAGATACTGACGTCTTTGAAACACGAGAATCTTTTGAGGTTGAGAGGATTGTGTTGTTCTAAAGGGAGGGGAGAGTGCTTTTTGATATACGATTTTGTGCCGAATGGGAACTTGTTGCATTCTCTTGATGTGAAGGATGGTAAAGGGGAGGTTCTCGAATGGTCTACTAGAGTTTCCATCATCAAAGGCATTGCTAAAGGTATTGGCTATTTACATGGAAGCAAAGCAAACAAACCAGCTCTGGTTCACCAAAACATCTCAGCTGAGAAAGTACTCATCGGCCAACACTACAACCCAATACTCTCGGATTCCGGGCTCCACAAACTACTAGCCGACGACATTGTATTCTCCACCCTCAAAGCCAGTGCTGCAATGGGATACTTGGCCCCTGAGTACACGACCACTGGCCGGTTCACCGAATTAAGTGATATTTACGCGTTTGGTATGATCATTTTCCAAATCCTCTCTGGAAAACGCAAAATCACCCAAACAATCCGCCATGGGGCCGAGTTTGGAAGAACAGAGGATTACATTGATACCAATCTCGAGGGGAAGTTTTTGGAGAATGAGGCAGTTAAGCTCGGGAAGATAGCAGTTCTTTGCACACATGAATCGGCTAACTACAGACCTGCCATTGAGGCTGTGGTTCAAGAACTGGGCTGA

Network for GWHGAAZE024981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	70	5.40E-07
PF13855.7	LRR_8	145	205	3.60E-10
PF07714.18	PK_Tyr_Ser-Thr	418	679	2.30E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.303
	SRR3591706	second leaf	14.338
	SRR3591707	mature leaf	7.172
	SRR3591708	Shoot apex	28.458
	SRR3591709	Stem	25.384
	SRR3591710	White floral bud	4.457
	SRR3591711	White flower	2.046
	SRR3591712	Green floral bud	1.189
	SRR3591713	Yellow flower	0.128
SRP173429	SRR8316895	Juvenile bud stage	17.612
	SRR8316896	Juvenile bud stage	19.228
	SRR8316897	Juvenile bud stage	5.231
	SRR8316894	Third green stage	2.305
	SRR8316900	Third green stage	1.735
	SRR8316901	Third green stage	2.430
	SRR8316898	Complete white stage	0.068
	SRR8316899	Complete white stage	6.212
	SRR8316903	Complete white stage	1.691
	SRR8316902	Silver flowering stage	0.036
	SRR8316904	Silver flowering stage	0.034
	SRR8316905	Silver flowering stage	0.001
	SRR8316906	Gold flowering stage	0.039
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.013
SRP132670	SRR6706286	Control	1.131
	SRR6706287	Light intensity 50%	1.432
	SRR6706288	Light intensity 20%	1.589
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.269
	CNS0095593	Slightly white alabastrum(diploid) 2	5.931
	CNS0095594	Slightly white alabastrum(diploid) 3	6.961
	CNS0095595	Whole white alabastrum(diploid) 2	7.906
	CNS0095596	Whole white alabastrum(diploid) 3	0.245
	CNS0095597	Whole white alabastrum(diploid) 4	3.751
	CNS0095598	Silvery flower (diploied) 1	15.670
	CNS0095599	Silvery flower (diploied) 2	28.118
	CNS0095600	Silvery flower (diploied) 3	8.394
	CNS0095601	Golden flower (diploid) 1	12.733
	CNS0095602	Golden flower (diploid) 2	8.642
	CNS0095603	Golden flower (diploid) 3	9.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.051
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.213
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.411
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.584
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	3.178
	CNS0095612	Silvery flower (tetraploid) 3	0.870
	CNS0095613	Golden flower (tetraploid) 1	0.078
	CNS0095614	Golden flower (tetraploid) 2	0.066
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	5.161
	CRR073298	Stem 2	6.364
	CRR073299	Stem 3	7.644
	CRR073300	Leaf 1	0.913
	CRR073301	Leaf 2	2.447
	CRR073302	Leaf 3	0.836
	CRR073303	Juvenile bud 1	0.738
	CRR073304	Juvenile bud 2	0.768
	CRR073305	Juvenile bud 3	0.945
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	0.106
	CRR073310	Second white 2	0.355
	CRR073311	Second white 3	0.077
	CRR073312	Silver flowering 1	0.303
	CRR073313	Silver flowering 2	0.182
	CRR073314	Silver flowering 3	0.088
	CRR073315	Gold flowering 1	5.096
	CRR073316	Gold flowering 2	5.122
	CRR073317	Gold flowering 3	5.448
	CRR073318	Tawny withering 1	8.752
	CRR073319	Tawny withering 2	6.409
	CRR073320	Tawny withering 3	12.291