Detail information of GWHGAAZE024975


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278966.10PREDICTED: protein transport Sec1a isoform X3 [Vitis vinifera]
Swissprottr|Q9C5X3|KEULE_ARATH0SNARE-interacting protein KEULE
trEMBLtr|A0A068TN08|A0A068TN08_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97685.1}
TAIR10AT1G12360.10Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5289977852913621-
GWHAAZE00000007mRNA5289977852913621-
GWHAAZE00000007exon5289977852899959-
GWHAAZE00000007exon5290009352900203-
GWHAAZE00000007exon5290086052900949-
GWHAAZE00000007exon5290106852901158-
GWHAAZE00000007exon5290176052901959-
GWHAAZE00000007exon5290303552903115-
GWHAAZE00000007exon5290399652904115-
GWHAAZE00000007exon5290523452905329-
GWHAAZE00000007exon5290544152905566-
GWHAAZE00000007exon5290621052906303-
GWHAAZE00000007exon5290740852907478-
GWHAAZE00000007exon5290756252907660-
GWHAAZE00000007exon5290775052907833-
GWHAAZE00000007exon5290842952908620-
GWHAAZE00000007exon5290902352909154-
GWHAAZE00000007exon5291000052910032-
GWHAAZE00000007exon5291015252910248-
GWHAAZE00000007exon5291037252910422-
GWHAAZE00000007exon5291072952910807-
GWHAAZE00000007exon5291115752911238-
GWHAAZE00000007exon5291211652912174-
GWHAAZE00000007exon5291353252913621-
GWHAAZE00000007five_prime_UTR5291360252913621-
GWHAAZE00000007CDS5291353252913601-
GWHAAZE00000007CDS5291211652912174-
GWHAAZE00000007CDS5291115752911238-
GWHAAZE00000007CDS5291072952910807-
GWHAAZE00000007CDS5291037252910422-
GWHAAZE00000007CDS5291015252910248-
GWHAAZE00000007CDS5291000052910032-
GWHAAZE00000007CDS5290902352909154-
GWHAAZE00000007CDS5290842952908620-
GWHAAZE00000007CDS5290775052907833-
GWHAAZE00000007CDS5290756252907660-
GWHAAZE00000007CDS5290740852907478-
GWHAAZE00000007CDS5290621052906303-
GWHAAZE00000007CDS5290544152905566-
GWHAAZE00000007CDS5290523452905329-
GWHAAZE00000007CDS5290399652904115-
GWHAAZE00000007CDS5290303552903115-
GWHAAZE00000007CDS5290176052901959-
GWHAAZE00000007CDS5290106852901158-
GWHAAZE00000007CDS5290086052900949-
GWHAAZE00000007CDS5290015052900203-
GWHAAZE00000007three_prime_UTR5290009352900149-
GWHAAZE00000007three_prime_UTR5289977852899959-
Transcript Sequence

Network for GWHGAAZE024975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00995.24Sec1436495.20E-113
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15292STXBP1, MUNC18-1 Synaptic vesicle cycle map04721

Gene Ontology

GO term OntologyName
GO:0006904biological_processvesicle docking involved in exocytosis
GO:0016192biological_processvesicle-mediated transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.195
SRR3591706second leaf0.000
SRR3591707mature leaf0.066
SRR3591708Shoot apex0.000
SRR3591709Stem0.558
SRR3591710White floral bud15.398
SRR3591711White flower13.387
SRR3591712Green floral bud33.410
SRR3591713Yellow flower12.390
SRP173429 SRR8316895Juvenile bud stage 2.966
SRR8316896Juvenile bud stage 6.701
SRR8316897Juvenile bud stage 3.723
SRR8316894Third green stage 3.318
SRR8316900Third green stage 22.105
SRR8316901Third green stage 21.973
SRR8316898Complete white stage 0.060
SRR8316899Complete white stage 0.150
SRR8316903Complete white stage 0.148
SRR8316902Silver flowering stage1.353
SRR8316904Silver flowering stage1.341
SRR8316905Silver flowering stage0.948
SRR8316906Gold flowering stage 9.283
SRR8316907Gold flowering stage 8.390
SRR8316908Gold flowering stage 4.424
SRP132670SRR6706286Control11.926
SRR6706287Light intensity 50%10.743
SRR6706288Light intensity 20%9.841
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.648
CNS0095593Slightly white alabastrum(diploid) 28.144
CNS0095594Slightly white alabastrum(diploid) 310.476
CNS0095595Whole white alabastrum(diploid) 219.567
CNS0095596Whole white alabastrum(diploid) 324.814
CNS0095597Whole white alabastrum(diploid) 427.071
CNS0095598Silvery flower (diploied) 10.368
CNS0095599Silvery flower (diploied) 20.542
CNS0095600Silvery flower (diploied) 30.815
CNS0095601Golden flower (diploid) 10.640
CNS0095602Golden flower (diploid) 21.713
CNS0095603Golden flower (diploid) 31.544
CNS0095604Slightly white alabastrum(tetraploid) 120.252
CNS0095605Slightly white alabastrum(tetraploid) 214.518
CNS0095606Slightly white alabastrum(tetraploid) 30.463
CNS0095607Whole white alabastrum(tetraploid) 138.818
CNS0095608Whole white alabastrum(tetraploid) 248.501
CNS0095609Whole white alabastrum(tetraploid) 333.206
CNS0095610Silvery flower (tetraploid) 10.937
CNS0095611Silvery flower (tetraploid) 20.665
CNS0095612Silvery flower (tetraploid) 33.614
CNS0095613Golden flower (tetraploid) 11.046
CNS0095614Golden flower (tetraploid) 20.921
CNS0095615Golden flower (tetraploid) 31.481
CRA001975CRR073297Stem 12.675
CRR073298Stem 22.397
CRR073299Stem 31.025
CRR073300Leaf 19.072
CRR073301Leaf 27.355
CRR073302Leaf 35.041
CRR073303Juvenile bud 17.799
CRR073304Juvenile bud 25.554
CRR073305Juvenile bud 30.348
CRR073306Third green 11.255
CRR073307Third green 21.184
CRR073308Third green 30.724
CRR073309Second white 11.874
CRR073310Second white 22.951
CRR073311Second white 34.246
CRR073312Silver flowering 13.859
CRR073313Silver flowering 22.780
CRR073314Silver flowering 33.977
CRR073315Gold flowering 10.084
CRR073316Gold flowering 20.465
CRR073317Gold flowering 30.272
CRR073318Tawny withering 11.614
CRR073319Tawny withering 21.521
CRR073320Tawny withering 30.597