Gene detail

Detail information of GWHGAAZE024970

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273349.2	PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FQ09\|KU80_ARATH	ATP-dependent DNA helicase 2 subunit KU80
trEMBL	tr\|D7U7S3\|D7U7S3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI38852.3}
TAIR10	AT1G48050.1	Ku80 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52802036	52809987	+
GWHAAZE00000007	mRNA	52802036	52809987	+
GWHAAZE00000007	exon	52802036	52802128	+
GWHAAZE00000007	exon	52802317	52802368	+
GWHAAZE00000007	exon	52803146	52803288	+
GWHAAZE00000007	exon	52803445	52803469	+
GWHAAZE00000007	exon	52803822	52804225	+
GWHAAZE00000007	exon	52805025	52805311	+
GWHAAZE00000007	exon	52805558	52805753	+
GWHAAZE00000007	exon	52806004	52806210	+
GWHAAZE00000007	exon	52807335	52807502	+
GWHAAZE00000007	exon	52808392	52808721	+
GWHAAZE00000007	exon	52809505	52809635	+
GWHAAZE00000007	exon	52809721	52809792	+
GWHAAZE00000007	exon	52809972	52809987	+
GWHAAZE00000007	CDS	52802036	52802128	+
GWHAAZE00000007	CDS	52802317	52802368	+
GWHAAZE00000007	CDS	52803146	52803288	+
GWHAAZE00000007	CDS	52803445	52803469	+
GWHAAZE00000007	CDS	52803822	52804225	+
GWHAAZE00000007	CDS	52805025	52805311	+
GWHAAZE00000007	CDS	52805558	52805753	+
GWHAAZE00000007	CDS	52806004	52806210	+
GWHAAZE00000007	CDS	52807335	52807502	+
GWHAAZE00000007	CDS	52808392	52808721	+
GWHAAZE00000007	CDS	52809505	52809635	+
GWHAAZE00000007	CDS	52809721	52809792	+
GWHAAZE00000007	CDS	52809972	52809987	+

Transcript Sequence
>GWHTAAZE025004 GAAGCATTACTTTTGTTGCTTGATGTTGGCCCCTCTATGCATGATATTCTGCCAGAGATTGCAAAAGTTTGTTCTATGCTAGTGCAAAAGAAGCTTGTTTACAGCAAGCACGATGAAGTAGGAGTTGTTTTGTTTGGCACTGAAGAGACTCGGAACGAGCTGACAACGGAAGTAGGTGGATATGAACATGTGCTGGTTTTGCAGCATATTAAAGTTGTTGATGGAGACCTAGTTAATGTTTTACAACAGCTTCCTCGAGGAACAGTTGCAGGTGATTGTATCCTATATCATCCTTTAGCTAGGAATTTTGTAGTTATTGATGCAATCGTTGTTGGGATGGATATGCTTATAAAAAAATTTGGAGAAACAAATAAGGGGAAAAAGCGCCTTTGTCTTATTACAAATGCAATTTATCCAATTAAAGATCCTTATGAAGGAACAAAGGAAGATCAAGTGAACACAATTGCTGCTCAGATGACTGCACATGGAATGAAAATGGATTGTGTTGTTTTTAGGGGAAAACAGAATTGCGATGCAGATAAGACAATAATGGAGGAGAATGATCGTCTGCTTAATATATTTTCCCAGATGACTTCTGCAAAGACTGTGCATGTTGAAAGTTCAACTTCATTATTAGGTGCACTTAGAACTCGTAATATATCACCTGTTACAGTTTACAGGGGTGATTTTGAACTTAGCTCCAACATGAAGATCAAGGTATGGGTGTACAAGAAAACATCTGAAGAGAAGTTCCCCACCCTGAAAAAGTACTCTGATAAAGCACCTCCCACTGATAAATTTGCCACTCATGAAATCAAGGTAGATTACGAGTACAAAAGTGTTGAAGATTCTAGTAAAGTTGTGCCTCCTGAACAAAGGATAAAAGGTTATCGTTATGGACCTCAAGTAGTTCCTATTTCCTCTGCTGAATGGGAAGCTGTGAAATTCAAACCGGAGAAGAGTGTGAAACTTCTAGGGTTTACAGATGCTTCAAACATAATGCGGCACTACTACATGAAAGACGTCAACATTTTTGTAGCTGAACCAGGCAATACAAGGGCCATACTTGCGGTTTCTGCATTAGCAAGAGCAATGAAGGAAATGAACAAAGTAGCGATTCTCCGGTGTGTATGGAGACAAGGACAGGGAAACGTTGTTATAGGGGTCTTAACTCCTAATATATCTGGCAAAGATAGTATTCCCGATTCATTTTACTTCAATGTGCTTCCTTTCGCTGAGGACGTTCGGGAGTTTCAGTTTCCGTCCTTCAGCAATTTCCCTGTGGCACTACAGCCAAATGAACAACAGCAAGAGGCAGCTGATAACTTGGTAAAGATGCTTGAACTTGCACCAACTGACAGAGAGGAAACTTTGCGGCCCGACTTCACACCAAATCCTGTTTTAGAGCGTTTTTATCGCCACCTTGAATTGAAATCAAAGCATCCAGATGCAACTGTACCACCACTTGATGAGACTCTGAAGAAGATAACAGAACCTGATCGTGAACTTCTTTCTCAAACCAAGCCTGTCATTGATGATTTTCGAAGACGATTTGAACTCAAGGAGAATCCAAAGCTGAAGAAATCTAGACGGTTAATACGAGAGAAACCATCTGGATCAAATGAAGAAGGCGGGGGCCTTGCGATCACTAACGATGCTGAAGCAGTCAATAATGCTTTAGAATATACATCTAAAGTCAAAGTTGAGAATATTGGGGATTTGAATCCTGTTCAAGATTTTGAAGCCATGATGTCTCGAAGAGATAGCCCAGTGTGGGTTAGTAAAGCAATTAATCTTATGAAAAACAAAATTTTCGATTTAGTGGAGGATTCTACTGGGGGGGATACCTATCAAAAGGCACTTGACTGTTTAGTTGCTCTTCGTAAAGGTTGCATCCTTGAGCAAGAACCGAAACAGTTCAATGATTTCCTTAGACATCTTTATAGATTCTGCAAAGAGAAAAACCTAGGCAGTTTTTCCGACTTTCTTACATCCAAAGAGATCTTGTTGATCACTAAAACCGAAGCCGAAGACAGTGAGATTACAGAAGACGAGGCTAGAATCTTTAAGGTTGAAACAGAGGCGAAACCTGAGCAAGGACTTTTAAGATTCTCATCATTGTAG

Network for GWHGAAZE024970

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03731.16	Ku_N	2	163	4.70E-13
PF02735.17	Ku	234	437	1.20E-41
PF03730.15	Ku_C	458	529	6.00E-09
PF08785.12	Ku_PK_bind	575	689	2.40E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10885	XRCC5, KU80, G22P2	Non-homologous end-joining	map03450

Gene Ontology

GO term	Ontology	Name
GO:0006303	biological_process	double-strand break repair via nonhomologous end joining
GO:0000723	biological_process	telomere maintenance
GO:0006310	biological_process	DNA recombination
GO:0005634	cellular_component	nucleus
GO:0043564	cellular_component	Ku70:Ku80 complex
GO:0003677	molecular_function	DNA binding
GO:0016817	molecular_function	hydrolase activity, acting on acid anhydrides
GO:0003684	molecular_function	damaged DNA binding
GO:0042162	molecular_function	telomeric DNA binding
GO:0003678	molecular_function	DNA helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.103
	SRR3591706	second leaf	4.528
	SRR3591707	mature leaf	3.101
	SRR3591708	Shoot apex	9.893
	SRR3591709	Stem	6.150
	SRR3591710	White floral bud	8.427
	SRR3591711	White flower	11.430
	SRR3591712	Green floral bud	14.332
	SRR3591713	Yellow flower	8.138
SRP173429	SRR8316895	Juvenile bud stage	10.133
	SRR8316896	Juvenile bud stage	16.128
	SRR8316897	Juvenile bud stage	7.523
	SRR8316894	Third green stage	8.491
	SRR8316900	Third green stage	19.654
	SRR8316901	Third green stage	17.155
	SRR8316898	Complete white stage	5.136
	SRR8316899	Complete white stage	23.005
	SRR8316903	Complete white stage	8.520
	SRR8316902	Silver flowering stage	3.615
	SRR8316904	Silver flowering stage	7.015
	SRR8316905	Silver flowering stage	2.902
	SRR8316906	Gold flowering stage	9.068
	SRR8316907	Gold flowering stage	9.543
	SRR8316908	Gold flowering stage	9.927
SRP132670	SRR6706286	Control	11.334
	SRR6706287	Light intensity 50%	11.986
	SRR6706288	Light intensity 20%	12.533
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.522
	CNS0095593	Slightly white alabastrum(diploid) 2	9.254
	CNS0095594	Slightly white alabastrum(diploid) 3	7.518
	CNS0095595	Whole white alabastrum(diploid) 2	7.811
	CNS0095596	Whole white alabastrum(diploid) 3	7.731
	CNS0095597	Whole white alabastrum(diploid) 4	8.709
	CNS0095598	Silvery flower (diploied) 1	7.438
	CNS0095599	Silvery flower (diploied) 2	6.907
	CNS0095600	Silvery flower (diploied) 3	7.884
	CNS0095601	Golden flower (diploid) 1	4.941
	CNS0095602	Golden flower (diploid) 2	7.869
	CNS0095603	Golden flower (diploid) 3	7.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.055
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.011
	CNS0095610	Silvery flower (tetraploid) 1	8.454
	CNS0095611	Silvery flower (tetraploid) 2	11.541
	CNS0095612	Silvery flower (tetraploid) 3	6.418
	CNS0095613	Golden flower (tetraploid) 1	2.602
	CNS0095614	Golden flower (tetraploid) 2	4.508
	CNS0095615	Golden flower (tetraploid) 3	3.039
CRA001975	CRR073297	Stem 1	7.723
	CRR073298	Stem 2	9.596
	CRR073299	Stem 3	8.462
	CRR073300	Leaf 1	9.867
	CRR073301	Leaf 2	9.151
	CRR073302	Leaf 3	7.114
	CRR073303	Juvenile bud 1	5.653
	CRR073304	Juvenile bud 2	4.097
	CRR073305	Juvenile bud 3	7.278
	CRR073306	Third green 1	0.512
	CRR073307	Third green 2	0.468
	CRR073308	Third green 3	1.228
	CRR073309	Second white 1	1.047
	CRR073310	Second white 2	1.569
	CRR073311	Second white 3	0.863
	CRR073312	Silver flowering 1	0.691
	CRR073313	Silver flowering 2	0.223
	CRR073314	Silver flowering 3	0.759
	CRR073315	Gold flowering 1	1.860
	CRR073316	Gold flowering 2	3.955
	CRR073317	Gold flowering 3	1.224
	CRR073318	Tawny withering 1	2.864
	CRR073319	Tawny withering 2	1.704
	CRR073320	Tawny withering 3	2.769