Gene detail

Detail information of GWHGAAZE024969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093209.1	3.1934E-156	PREDICTED: proteasome subunit beta type-1-like [Sesamum indicum]
COG	YP_007174727.1	2E-25	proteasome endopeptidase complex subunit beta
Swissprot	tr\|O82531\|PSB1_PETHY	2E-156	Proteasome subunit beta type-1
trEMBL	tr\|M1C263\|M1C263_SOLTU	5E-156	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT3G60820.3	2E-109	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52794642	52798265	+
GWHAAZE00000007	mRNA	52794642	52798265	+
GWHAAZE00000007	exon	52794642	52794688	+
GWHAAZE00000007	exon	52794777	52794884	+
GWHAAZE00000007	exon	52796074	52796155	+
GWHAAZE00000007	exon	52797111	52797240	+
GWHAAZE00000007	exon	52797327	52797469	+
GWHAAZE00000007	exon	52797582	52797668	+
GWHAAZE00000007	exon	52798191	52798265	+
GWHAAZE00000007	CDS	52794642	52794688	+
GWHAAZE00000007	CDS	52794777	52794884	+
GWHAAZE00000007	CDS	52796074	52796155	+
GWHAAZE00000007	CDS	52797111	52797240	+
GWHAAZE00000007	CDS	52797327	52797469	+
GWHAAZE00000007	CDS	52797582	52797668	+
GWHAAZE00000007	CDS	52798191	52798265	+

Transcript Sequence
>GWHTAAZE025003 ATGACAAAGCAACAAGCAAACTGGTCTCCCTACGACAACAATGGAGGAACTTGCGTTGCGATCGCAGGTGCAGATTATTGTGTGATTGCAGCCGATACTCGGATGTCCACTGGTTACAGTATTCTCACCCGTGATTACTCCAAAATCTGTAAACTAGCGGACAAATGTGTGTTGGCCTCTTCAGGATTCCAGGCTGATGTAAGAGCTTTACAAAAGGTCTTGTCTGCGAGGCACTTGATCTATCAACACCAACACAACAAACAGATGAGCTGCCCTGCAATGGGTCAGCTGCTCTCAAATACCCTTTACTATAAGCGTTTCTTCCCATATTATGCTTTCAATGTTCTTGGTGGCCTTGACACTGAAGGAAAGGGTTGCGTTTACACATATGATGCTGTTGGATCCTACGAAAGGGTTGGTTACAGTGCCCAAGGTTCTGGTGCCACACTCATTACACCTTTTCTTGACAACCAGCTGAAGTCTCCAAGCCCCCTCTTATTACCAGCCAAGGATGCTGTGACCCCACTTTCTGAAACAGAGGCTATTGATTTGGTCAAGACATGTTTTGCATCAGCTACAGAGAGGGACATTTACACTGGAGACAAACTGGAAATACTTGTCTTAAATGGTGATGGTATTCGTCGTGAATACATGGAGCTCCGAAAAGATTAA

Network for GWHGAAZE024969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	13	207	4.30E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02732	PSMB1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	189.135
	SRR3591706	second leaf	111.394
	SRR3591707	mature leaf	80.910
	SRR3591708	Shoot apex	174.563
	SRR3591709	Stem	152.005
	SRR3591710	White floral bud	168.610
	SRR3591711	White flower	355.223
	SRR3591712	Green floral bud	214.817
	SRR3591713	Yellow flower	337.582
SRP173429	SRR8316895	Juvenile bud stage	98.389
	SRR8316896	Juvenile bud stage	155.601
	SRR8316897	Juvenile bud stage	69.569
	SRR8316894	Third green stage	70.947
	SRR8316900	Third green stage	231.565
	SRR8316901	Third green stage	223.451
	SRR8316898	Complete white stage	82.147
	SRR8316899	Complete white stage	238.604
	SRR8316903	Complete white stage	135.216
	SRR8316902	Silver flowering stage	109.118
	SRR8316904	Silver flowering stage	133.543
	SRR8316905	Silver flowering stage	58.369
	SRR8316906	Gold flowering stage	333.259
	SRR8316907	Gold flowering stage	314.505
	SRR8316908	Gold flowering stage	320.325
SRP132670	SRR6706286	Control	379.269
	SRR6706287	Light intensity 50%	373.054
	SRR6706288	Light intensity 20%	414.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	130.751
	CNS0095593	Slightly white alabastrum(diploid) 2	150.715
	CNS0095594	Slightly white alabastrum(diploid) 3	127.991
	CNS0095595	Whole white alabastrum(diploid) 2	128.649
	CNS0095596	Whole white alabastrum(diploid) 3	134.062
	CNS0095597	Whole white alabastrum(diploid) 4	125.767
	CNS0095598	Silvery flower (diploied) 1	100.561
	CNS0095599	Silvery flower (diploied) 2	119.034
	CNS0095600	Silvery flower (diploied) 3	212.689
	CNS0095601	Golden flower (diploid) 1	121.300
	CNS0095602	Golden flower (diploid) 2	210.733
	CNS0095603	Golden flower (diploid) 3	203.059
	CNS0095604	Slightly white alabastrum(tetraploid) 1	146.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	125.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	166.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	98.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	95.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	153.733
	CNS0095610	Silvery flower (tetraploid) 1	218.687
	CNS0095611	Silvery flower (tetraploid) 2	221.655
	CNS0095612	Silvery flower (tetraploid) 3	185.474
	CNS0095613	Golden flower (tetraploid) 1	230.385
	CNS0095614	Golden flower (tetraploid) 2	225.416
	CNS0095615	Golden flower (tetraploid) 3	362.685
CRA001975	CRR073297	Stem 1	205.060
	CRR073298	Stem 2	202.325
	CRR073299	Stem 3	252.367
	CRR073300	Leaf 1	265.259
	CRR073301	Leaf 2	260.355
	CRR073302	Leaf 3	324.573
	CRR073303	Juvenile bud 1	360.349
	CRR073304	Juvenile bud 2	369.787
	CRR073305	Juvenile bud 3	315.922
	CRR073306	Third green 1	214.864
	CRR073307	Third green 2	192.805
	CRR073308	Third green 3	190.033
	CRR073309	Second white 1	498.407
	CRR073310	Second white 2	334.798
	CRR073311	Second white 3	265.302
	CRR073312	Silver flowering 1	270.971
	CRR073313	Silver flowering 2	309.581
	CRR073314	Silver flowering 3	203.655
	CRR073315	Gold flowering 1	119.466
	CRR073316	Gold flowering 2	129.397
	CRR073317	Gold flowering 3	135.640
	CRR073318	Tawny withering 1	211.423
	CRR073319	Tawny withering 2	195.089
	CRR073320	Tawny withering 3	205.423