Gene detail

Detail information of GWHGAAZE024943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08906.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8S8S1\|PEX16_ARATH	4E-145	Peroxisome biogenesis protein 16
trEMBL	tr\|A0A068UKA3\|A0A068UKA3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08906.1}
TAIR10	AT2G45690.1	2E-117	shrunken seed protein (SSE1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52415200	52420298	+
GWHAAZE00000007	mRNA	52415200	52420298	+
GWHAAZE00000007	exon	52415200	52415268	+
GWHAAZE00000007	exon	52416132	52416189	+
GWHAAZE00000007	exon	52416444	52416660	+
GWHAAZE00000007	exon	52417290	52417543	+
GWHAAZE00000007	exon	52418305	52418573	+
GWHAAZE00000007	exon	52419439	52419506	+
GWHAAZE00000007	exon	52419609	52419670	+
GWHAAZE00000007	exon	52420237	52420298	+
GWHAAZE00000007	CDS	52415200	52415268	+
GWHAAZE00000007	CDS	52416132	52416189	+
GWHAAZE00000007	CDS	52416444	52416660	+
GWHAAZE00000007	CDS	52417290	52417543	+
GWHAAZE00000007	CDS	52418305	52418573	+
GWHAAZE00000007	CDS	52419439	52419506	+
GWHAAZE00000007	CDS	52419609	52419670	+
GWHAAZE00000007	CDS	52420237	52420298	+

Transcript Sequence
>GWHTAAZE024977 ATGGAGGCTTATAAGAGGTGGGTTAGGAGGAACAAAGACTATGTTCATTCATTAGAGTCTCTAGTCAATGGATTGACATGGCTTCTTCCAGAGCGGTTTTCCAATTCAGAAATTGGACCAGAAGCAGTCACATCAATTTTGGGCATATTCACTGCTGTCAACGAACATATAATAGATACGACCCCGACCCCAGCAAATAGAGGAGATGCAGAGCATTCTTTATTCCCCTACTCGTTGTGCATAACATTGCTAAAAGACATAGAAACCTTGGTTGAAGTTGTGGGCCAACAATTCTACGGTGATGACAAAAAGTGGAACTTCATTGCCGCTACAGAGGCTTTAAAGGTACTAGTGAGGCTAGCTTTATTTCGGAGTAGTGGGTACCAGATGCTTTTGCATGGAGGGGAGAATCCAAACGTTGACAAGGCTTCAAATGCTTCGAATCAGCGACATGGATATGAGAATTTAGCAAATCCACGGAATCTCGAAGGAAGGGCGTTGTCGGCCTTGACTAGGTTTGGAGAGAATGCCAGGATTAATTCCGATCCATCATGGTTGCGTAGGGTTCAACAACACCATTCAGCGACGGAGCCACCAAATTTGTTGGTTGAGAGACCAACACTTTCTAGTATATTATCAGAGAAGGGTATCTTGGGGGGCTTATTTGTGATGGGGGAGGTGATGAACATCCTTAGACCTCTTATTTATGTGCTATTGATACGAAAATATGGAACTCGTTCATGGTTTCCTTGGTTCTTCTCGTTGGGTGTGGACCTCGTGGGAATGGGCATTCTTTCACAAGTTACTAAGTCACAGCATGGTATGAAAGACCAACATTTTCATCTGTCTGACCCTGAAAAGCATGAGTTAAAAAGGCGAAAGCTATTGTGGGCACTTTACCTTATGCGAGATCCGTTCTTTAGCAAATATACCCGGCAAAGACTTGAAAGCACTGAAAAAATATTAGAACCTGTCCCAATTGTTGGATTTCTTGCAGGGAAGCTTATTGAGCTTTTGGTTGGAGCTCAGACGCGCTATACCTACATGTCCGGTTCATGA

Network for GWHGAAZE024943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08610.11	Pex16	2	343	3.50E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13335	PEX16	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.751
	SRR3591706	second leaf	7.273
	SRR3591707	mature leaf	7.318
	SRR3591708	Shoot apex	15.413
	SRR3591709	Stem	16.327
	SRR3591710	White floral bud	14.600
	SRR3591711	White flower	20.129
	SRR3591712	Green floral bud	15.336
	SRR3591713	Yellow flower	21.203
SRP173429	SRR8316895	Juvenile bud stage	11.396
	SRR8316896	Juvenile bud stage	15.131
	SRR8316897	Juvenile bud stage	8.449
	SRR8316894	Third green stage	5.070
	SRR8316900	Third green stage	15.599
	SRR8316901	Third green stage	17.074
	SRR8316898	Complete white stage	5.103
	SRR8316899	Complete white stage	20.916
	SRR8316903	Complete white stage	6.987
	SRR8316902	Silver flowering stage	8.541
	SRR8316904	Silver flowering stage	10.988
	SRR8316905	Silver flowering stage	5.535
	SRR8316906	Gold flowering stage	25.649
	SRR8316907	Gold flowering stage	21.785
	SRR8316908	Gold flowering stage	24.068
SRP132670	SRR6706286	Control	11.258
	SRR6706287	Light intensity 50%	13.340
	SRR6706288	Light intensity 20%	12.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.707
	CNS0095593	Slightly white alabastrum(diploid) 2	19.519
	CNS0095594	Slightly white alabastrum(diploid) 3	14.729
	CNS0095595	Whole white alabastrum(diploid) 2	16.189
	CNS0095596	Whole white alabastrum(diploid) 3	13.460
	CNS0095597	Whole white alabastrum(diploid) 4	10.383
	CNS0095598	Silvery flower (diploied) 1	14.947
	CNS0095599	Silvery flower (diploied) 2	10.597
	CNS0095600	Silvery flower (diploied) 3	16.527
	CNS0095601	Golden flower (diploid) 1	13.900
	CNS0095602	Golden flower (diploid) 2	19.980
	CNS0095603	Golden flower (diploid) 3	17.621
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.366
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.743
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.415
	CNS0095610	Silvery flower (tetraploid) 1	23.979
	CNS0095611	Silvery flower (tetraploid) 2	21.894
	CNS0095612	Silvery flower (tetraploid) 3	21.954
	CNS0095613	Golden flower (tetraploid) 1	19.251
	CNS0095614	Golden flower (tetraploid) 2	21.820
	CNS0095615	Golden flower (tetraploid) 3	17.029
CRA001975	CRR073297	Stem 1	12.959
	CRR073298	Stem 2	11.826
	CRR073299	Stem 3	11.833
	CRR073300	Leaf 1	14.325
	CRR073301	Leaf 2	13.298
	CRR073302	Leaf 3	12.085
	CRR073303	Juvenile bud 1	14.377
	CRR073304	Juvenile bud 2	13.793
	CRR073305	Juvenile bud 3	18.664
	CRR073306	Third green 1	13.822
	CRR073307	Third green 2	11.110
	CRR073308	Third green 3	10.461
	CRR073309	Second white 1	20.422
	CRR073310	Second white 2	18.597
	CRR073311	Second white 3	22.163
	CRR073312	Silver flowering 1	21.691
	CRR073313	Silver flowering 2	11.169
	CRR073314	Silver flowering 3	8.695
	CRR073315	Gold flowering 1	7.383
	CRR073316	Gold flowering 2	7.903
	CRR073317	Gold flowering 3	6.818
	CRR073318	Tawny withering 1	10.264
	CRR073319	Tawny withering 2	11.169
	CRR073320	Tawny withering 3	8.772