Gene detail

Detail information of GWHGAAZE024932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008232879.1	2.0678E-107	PREDICTED: arginine/serine-rich-splicing factor RSP41-like isoform X2 [Prunus mume]
Swissprot	tr\|P92964\|SRS31_ARATH	5E-64	Serine/arginine-rich splicing factor RS31
trEMBL	tr\|M5XKH7\|M5XKH7_PRUPE	2E-106	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19535.1}
TAIR10	AT4G25500.3	2E-41	arginine/serine-rich splicing factor 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51918119	51919506	-
GWHAAZE00000007	mRNA	51918119	51919506	-
GWHAAZE00000007	exon	51918119	51918533	-
GWHAAZE00000007	exon	51918975	51919207	-
GWHAAZE00000007	exon	51919411	51919506	-
GWHAAZE00000007	CDS	51919411	51919506	-
GWHAAZE00000007	CDS	51918975	51919207	-
GWHAAZE00000007	CDS	51918119	51918533	-

Transcript Sequence
>GWHTAAZE024966 ATGGACGATGAGCGAGATGCTGAGGATGCAATTCGAAGACTTGACCATACAGAGTTTGGTAGAAAGGGCCGTCGACTTCGTGTTGAGTGGACTAAGCAAGAACGTGGCATTAGAAGGCCCGATAATTCCCGAAGATCAGCTAATGCAAAACCCTCAAAAACACTGTTTGTCATTAATTTTGACCCGGTTCACACTAGGACAAGGGACCTGGAGAAGCACTTCGAACCTCATGGGAGAGTATCAAACATAAGGATCAGAAGGAATTTCGCTTTTATTCAGTTTGAATCGGAGGATGAGGCTGCGAAAGCATTAGAGGAAACAAACATGAGCAAGTTCATGGATCGGGTTATCTCAGTGGAATACGCAGTCCGAGATGACGATGACAAAAGAAATGGACACAGTCCTGATAGAAGAGGCCGTGGTGATATGTCTCCAGATAGAAGAAATCATGGCCGTTCCCCAAGTCCCTATCGTAGGGATAGAGATAGCCCCGATTATGGCCGTGGATCCAACCCCAAGTCCAGACCCGAGCGAAGAGGAAGCCCGGACTATGAAAGGGCTGGCAGCCCCGATTATGGCCATGGATCCAACCCTAAATCTAGACCTGAGCGAAGAGGAAGTCCTGATTATGAAAGGGCTGACAGCCCTGATTATGGCCGTGGATCCTACCCTAAGTCCAGACCCAAGCGAAGAGGAAGTCCCGGTTATGAAAGGGCCGACAGCCCGGTCAAGGAGAGATACCAA

Network for GWHGAAZE024932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	55	117	6.00E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12893	SFRS4_5_6	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.009
	SRR3591706	second leaf	40.498
	SRR3591707	mature leaf	61.642
	SRR3591708	Shoot apex	42.910
	SRR3591709	Stem	56.446
	SRR3591710	White floral bud	65.667
	SRR3591711	White flower	59.527
	SRR3591712	Green floral bud	56.588
	SRR3591713	Yellow flower	51.834
SRP173429	SRR8316895	Juvenile bud stage	30.851
	SRR8316896	Juvenile bud stage	45.176
	SRR8316897	Juvenile bud stage	14.566
	SRR8316894	Third green stage	21.750
	SRR8316900	Third green stage	42.408
	SRR8316901	Third green stage	51.373
	SRR8316898	Complete white stage	20.436
	SRR8316899	Complete white stage	91.393
	SRR8316903	Complete white stage	34.903
	SRR8316902	Silver flowering stage	20.363
	SRR8316904	Silver flowering stage	23.451
	SRR8316905	Silver flowering stage	10.128
	SRR8316906	Gold flowering stage	33.374
	SRR8316907	Gold flowering stage	27.842
	SRR8316908	Gold flowering stage	38.474
SRP132670	SRR6706286	Control	46.506
	SRR6706287	Light intensity 50%	54.694
	SRR6706288	Light intensity 20%	60.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.178
	CNS0095593	Slightly white alabastrum(diploid) 2	37.097
	CNS0095594	Slightly white alabastrum(diploid) 3	24.155
	CNS0095595	Whole white alabastrum(diploid) 2	29.594
	CNS0095596	Whole white alabastrum(diploid) 3	26.407
	CNS0095597	Whole white alabastrum(diploid) 4	29.605
	CNS0095598	Silvery flower (diploied) 1	56.613
	CNS0095599	Silvery flower (diploied) 2	32.782
	CNS0095600	Silvery flower (diploied) 3	32.409
	CNS0095601	Golden flower (diploid) 1	40.003
	CNS0095602	Golden flower (diploid) 2	28.832
	CNS0095603	Golden flower (diploid) 3	25.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.368
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.712
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.617
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.060
	CNS0095610	Silvery flower (tetraploid) 1	38.427
	CNS0095611	Silvery flower (tetraploid) 2	37.245
	CNS0095612	Silvery flower (tetraploid) 3	38.754
	CNS0095613	Golden flower (tetraploid) 1	34.102
	CNS0095614	Golden flower (tetraploid) 2	49.549
	CNS0095615	Golden flower (tetraploid) 3	36.435
CRA001975	CRR073297	Stem 1	48.042
	CRR073298	Stem 2	39.624
	CRR073299	Stem 3	32.066
	CRR073300	Leaf 1	44.469
	CRR073301	Leaf 2	49.805
	CRR073302	Leaf 3	30.242
	CRR073303	Juvenile bud 1	33.782
	CRR073304	Juvenile bud 2	17.645
	CRR073305	Juvenile bud 3	35.158
	CRR073306	Third green 1	1.845
	CRR073307	Third green 2	3.014
	CRR073308	Third green 3	3.816
	CRR073309	Second white 1	3.075
	CRR073310	Second white 2	4.092
	CRR073311	Second white 3	3.643
	CRR073312	Silver flowering 1	2.088
	CRR073313	Silver flowering 2	1.442
	CRR073314	Silver flowering 3	1.013
	CRR073315	Gold flowering 1	28.592
	CRR073316	Gold flowering 2	42.228
	CRR073317	Gold flowering 3	21.749
	CRR073318	Tawny withering 1	37.486
	CRR073319	Tawny withering 2	41.744
	CRR073320	Tawny withering 3	41.506