Detail information of GWHGAAZE024925


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272112.10PREDICTED: shaggy-related protein kinase theta [Vitis vinifera]
COGYP_003265973.13E-22serine/threonine protein kinase
Swissprottr|Q96287|KSG8_ARATH0Shaggy-related protein kinase theta
trEMBLtr|D7U7I5|D7U7I5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI38764.3}
TAIR10AT4G00720.10shaggy-like protein kinase 32

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5180816151812539-
GWHAAZE00000007mRNA5180816151812539-
GWHAAZE00000007exon5180816151808225-
GWHAAZE00000007exon5180854251808644-
GWHAAZE00000007exon5180876651808849-
GWHAAZE00000007exon5180908151809176-
GWHAAZE00000007exon5180929051809397-
GWHAAZE00000007exon5180986551810005-
GWHAAZE00000007exon5181009151810147-
GWHAAZE00000007exon5181095551811029-
GWHAAZE00000007exon5181112751811399-
GWHAAZE00000007exon5181188951811948-
GWHAAZE00000007exon5181203651812125-
GWHAAZE00000007exon5181230651812539-
GWHAAZE00000007CDS5181230651812539-
GWHAAZE00000007CDS5181203651812125-
GWHAAZE00000007CDS5181188951811948-
GWHAAZE00000007CDS5181112751811399-
GWHAAZE00000007CDS5181095551811029-
GWHAAZE00000007CDS5181009151810147-
GWHAAZE00000007CDS5180986551810005-
GWHAAZE00000007CDS5180929051809397-
GWHAAZE00000007CDS5180908151809176-
GWHAAZE00000007CDS5180876651808849-
GWHAAZE00000007CDS5180854251808644-
GWHAAZE00000007CDS5180816151808225-
Transcript Sequence

Network for GWHGAAZE024925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1134153.00E-57
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_GSK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.475
SRR3591706second leaf20.929
SRR3591707mature leaf13.072
SRR3591708Shoot apex34.705
SRR3591709Stem26.396
SRR3591710White floral bud161.652
SRR3591711White flower27.052
SRR3591712Green floral bud107.335
SRR3591713Yellow flower18.054
SRP173429 SRR8316895Juvenile bud stage 22.686
SRR8316896Juvenile bud stage 51.831
SRR8316897Juvenile bud stage 24.028
SRR8316894Third green stage 20.348
SRR8316900Third green stage 67.516
SRR8316901Third green stage 68.623
SRR8316898Complete white stage 5.368
SRR8316899Complete white stage 17.919
SRR8316903Complete white stage 9.508
SRR8316902Silver flowering stage9.739
SRR8316904Silver flowering stage15.125
SRR8316905Silver flowering stage6.480
SRR8316906Gold flowering stage 15.606
SRR8316907Gold flowering stage 14.450
SRR8316908Gold flowering stage 14.133
SRP132670SRR6706286Control47.194
SRR6706287Light intensity 50%45.750
SRR6706288Light intensity 20%41.499
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.438
CNS0095593Slightly white alabastrum(diploid) 255.588
CNS0095594Slightly white alabastrum(diploid) 377.082
CNS0095595Whole white alabastrum(diploid) 2123.639
CNS0095596Whole white alabastrum(diploid) 3143.177
CNS0095597Whole white alabastrum(diploid) 4157.482
CNS0095598Silvery flower (diploied) 125.931
CNS0095599Silvery flower (diploied) 233.913
CNS0095600Silvery flower (diploied) 320.377
CNS0095601Golden flower (diploid) 126.152
CNS0095602Golden flower (diploid) 225.512
CNS0095603Golden flower (diploid) 325.489
CNS0095604Slightly white alabastrum(tetraploid) 1108.104
CNS0095605Slightly white alabastrum(tetraploid) 2119.968
CNS0095606Slightly white alabastrum(tetraploid) 317.671
CNS0095607Whole white alabastrum(tetraploid) 1187.907
CNS0095608Whole white alabastrum(tetraploid) 2195.446
CNS0095609Whole white alabastrum(tetraploid) 397.318
CNS0095610Silvery flower (tetraploid) 113.272
CNS0095611Silvery flower (tetraploid) 229.819
CNS0095612Silvery flower (tetraploid) 348.721
CNS0095613Golden flower (tetraploid) 113.900
CNS0095614Golden flower (tetraploid) 214.555
CNS0095615Golden flower (tetraploid) 332.882
CRA001975CRR073297Stem 156.157
CRR073298Stem 247.166
CRR073299Stem 333.980
CRR073300Leaf 187.251
CRR073301Leaf 270.133
CRR073302Leaf 346.219
CRR073303Juvenile bud 170.219
CRR073304Juvenile bud 240.780
CRR073305Juvenile bud 328.679
CRR073306Third green 128.512
CRR073307Third green 231.486
CRR073308Third green 335.408
CRR073309Second white 19.490
CRR073310Second white 218.757
CRR073311Second white 316.747
CRR073312Silver flowering 145.579
CRR073313Silver flowering 247.791
CRR073314Silver flowering 329.753
CRR073315Gold flowering 128.205
CRR073316Gold flowering 224.620
CRR073317Gold flowering 314.098
CRR073318Tawny withering 158.967
CRR073319Tawny withering 255.710
CRR073320Tawny withering 355.198