Gene detail

Detail information of GWHGAAZE024922

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008232752.1	0	PREDICTED: cell division protein FtsY homolog, chloroplastic [Prunus mume]
COG	YP_002491129.1	3E-88	signal recognition particle-docking protein FtsY
Swissprot	tr\|O80842\|CFTSY_ARATH	0	Cell division protein FtsY homolog, chloroplastic (Precursor)
trEMBL	tr\|A0A068VG22\|A0A068VG22_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_661 {ECO:0000313\|EMBL:CDP19750.1}
TAIR10	AT2G45770.1	2E-170	signal recognition particle receptor protein, chloroplast (FTSY)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51760981	51765931	-
GWHAAZE00000007	mRNA	51760981	51765931	-
GWHAAZE00000007	exon	51760981	51761094	-
GWHAAZE00000007	exon	51761230	51761292	-
GWHAAZE00000007	exon	51761679	51761747	-
GWHAAZE00000007	exon	51761913	51761995	-
GWHAAZE00000007	exon	51762291	51762359	-
GWHAAZE00000007	exon	51762465	51762585	-
GWHAAZE00000007	exon	51763849	51763886	-
GWHAAZE00000007	exon	51764158	51764216	-
GWHAAZE00000007	exon	51764332	51764405	-
GWHAAZE00000007	exon	51764643	51764747	-
GWHAAZE00000007	exon	51765638	51765931	-
GWHAAZE00000007	CDS	51765638	51765931	-
GWHAAZE00000007	CDS	51764643	51764747	-
GWHAAZE00000007	CDS	51764332	51764405	-
GWHAAZE00000007	CDS	51764158	51764216	-
GWHAAZE00000007	CDS	51763849	51763886	-
GWHAAZE00000007	CDS	51762465	51762585	-
GWHAAZE00000007	CDS	51762291	51762359	-
GWHAAZE00000007	CDS	51761913	51761995	-
GWHAAZE00000007	CDS	51761679	51761747	-
GWHAAZE00000007	CDS	51761230	51761292	-
GWHAAZE00000007	CDS	51760981	51761094	-

Transcript Sequence
>GWHTAAZE024956 ATGGCGTCTCTACTTCCTCACCTCTCTACTCTCCCCTCCAAATCTCCTCCTTCACACTCTCTCTTCAACAGCATCTCTCTGTCACGAACCGGAATTTCCAGGTTCAGATGCTCGGCCGGACAGACCGGGTTCTTCGGGAAACTAGGCCGGTTAATCAAAGAGAAGGCGAAGAGCGATGTTGAAAAAGTCTTCTCGGGTTTCTCAAAGACTCGTGATAATCTCGCGGTTATCGATGAGCTTCTCCTCTACTGGAACCTCTCTGATACTGACCGTGTTCTCGATGAATTGGAAGAGGCCTTGCTGGTGTCAGATTTCGGGCCAAAGATTACTATAAAGATTGTGGAGAACTTGCGGGATGATATATATGCTGGAAAGCTAAAATCAGGAAGCGAGATAAAGGATGCTTTGAAGAAAATTGTGTTGGATTTGTTGACGAGTAAAGGACTTAAAACAGAGCTTCAACTTGGGTTCAGGAAACCAGCAGTAATCATGATAGTAGGCGTTAATGGAGGTGGAAAGACAACATCTCTTGGTAAATTGGCCCATAAGTTGAAGAAAGAGGGGGCTAAGATATTATTGGCAGCAGGTGATACATTTAGAGCAGCAGCTAGTGATCAACTGGAGATTTGGGCAGAGAGGACTGGTTGTGAGATTGTTGTTGCCGAGAAAGAAAAGGCCAAAGCTTCATCAGTTCTTTCTCAGGCTGTTAAAAGAGGGAAAGAACAAGGCTTTGATGTTGTTTTGTGCGACACCTCCGGACGTCTGCACACTAATTACAGCTTGATGGAGGAATTAATTGCTTGCAAGAAAAGTATTTCTAAAGTTGTTGCTGGCGCTCCCAATGAAATCCTGCTTGTTCTTGATGGAACAACTGGTTTGAATATGCTTCCACAAGCAAGAGAGTTCAACGAGGTAGTTGGAATAACTGGTTTTGTCTTGACAAAACTTGATGGTTCTGCACGAGGCGGTTGTGTGGTTAGTGTAGTTGACGAGCTTGGTATTCCTGTGAAGTTTGTAGGAGTTGGCGAAAGCGTAGAAGACCTACAACCCTTTGATCCAGAGGCCTTTGTTAATGCCATATTTTCATGA

Network for GWHGAAZE024922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02881.20	SRP54_N	89	138	4.70E-08
PF00448.23	SRP54	160	361	5.00E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03110	ftsY	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.696
	SRR3591706	second leaf	29.036
	SRR3591707	mature leaf	14.968
	SRR3591708	Shoot apex	32.472
	SRR3591709	Stem	11.238
	SRR3591710	White floral bud	18.452
	SRR3591711	White flower	16.626
	SRR3591712	Green floral bud	18.352
	SRR3591713	Yellow flower	32.183
SRP173429	SRR8316895	Juvenile bud stage	15.707
	SRR8316896	Juvenile bud stage	15.986
	SRR8316897	Juvenile bud stage	11.409
	SRR8316894	Third green stage	8.378
	SRR8316900	Third green stage	29.336
	SRR8316901	Third green stage	23.896
	SRR8316898	Complete white stage	13.267
	SRR8316899	Complete white stage	27.546
	SRR8316903	Complete white stage	15.033
	SRR8316902	Silver flowering stage	12.689
	SRR8316904	Silver flowering stage	17.330
	SRR8316905	Silver flowering stage	12.510
	SRR8316906	Gold flowering stage	38.127
	SRR8316907	Gold flowering stage	32.884
	SRR8316908	Gold flowering stage	44.500
SRP132670	SRR6706286	Control	18.239
	SRR6706287	Light intensity 50%	18.331
	SRR6706288	Light intensity 20%	22.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.007
	CNS0095593	Slightly white alabastrum(diploid) 2	12.813
	CNS0095594	Slightly white alabastrum(diploid) 3	10.833
	CNS0095595	Whole white alabastrum(diploid) 2	13.417
	CNS0095596	Whole white alabastrum(diploid) 3	14.175
	CNS0095597	Whole white alabastrum(diploid) 4	14.024
	CNS0095598	Silvery flower (diploied) 1	9.306
	CNS0095599	Silvery flower (diploied) 2	13.078
	CNS0095600	Silvery flower (diploied) 3	19.783
	CNS0095601	Golden flower (diploid) 1	12.775
	CNS0095602	Golden flower (diploid) 2	18.922
	CNS0095603	Golden flower (diploid) 3	17.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.177
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.899
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.735
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.224
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.713
	CNS0095610	Silvery flower (tetraploid) 1	28.242
	CNS0095611	Silvery flower (tetraploid) 2	29.401
	CNS0095612	Silvery flower (tetraploid) 3	28.199
	CNS0095613	Golden flower (tetraploid) 1	23.423
	CNS0095614	Golden flower (tetraploid) 2	29.876
	CNS0095615	Golden flower (tetraploid) 3	29.871
CRA001975	CRR073297	Stem 1	20.649
	CRR073298	Stem 2	23.666
	CRR073299	Stem 3	20.444
	CRR073300	Leaf 1	22.706
	CRR073301	Leaf 2	18.264
	CRR073302	Leaf 3	20.378
	CRR073303	Juvenile bud 1	26.234
	CRR073304	Juvenile bud 2	23.180
	CRR073305	Juvenile bud 3	18.132
	CRR073306	Third green 1	20.870
	CRR073307	Third green 2	14.668
	CRR073308	Third green 3	16.921
	CRR073309	Second white 1	18.935
	CRR073310	Second white 2	24.726
	CRR073311	Second white 3	21.951
	CRR073312	Silver flowering 1	28.612
	CRR073313	Silver flowering 2	21.185
	CRR073314	Silver flowering 3	23.772
	CRR073315	Gold flowering 1	20.109
	CRR073316	Gold flowering 2	28.775
	CRR073317	Gold flowering 3	17.878
	CRR073318	Tawny withering 1	13.587
	CRR073319	Tawny withering 2	12.338
	CRR073320	Tawny withering 3	6.675