Gene detail

Detail information of GWHGAAZE024915

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010053674.1	9.0393E-133	PREDICTED: (+)-neomenthol dehydrogenase-like [Eucalyptus grandis]
COG	YP_008149897.1	1E-45	hypothetical protein SCE1572_17400
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	7E-121	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A059CHV7\|A0A059CHV7_EUCGR	3E-133	Uncharacterized protein {ECO:0000313\|EMBL:KCW78033.1}
TAIR10	AT3G61220.1	1E-97	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51677040	51680338	-
GWHAAZE00000007	mRNA	51677040	51680338	-
GWHAAZE00000007	exon	51677040	51677411	-
GWHAAZE00000007	exon	51677567	51677743	-
GWHAAZE00000007	exon	51679291	51679359	-
GWHAAZE00000007	exon	51679820	51680066	-
GWHAAZE00000007	exon	51680304	51680338	-
GWHAAZE00000007	CDS	51680304	51680338	-
GWHAAZE00000007	CDS	51679820	51680066	-
GWHAAZE00000007	CDS	51679291	51679359	-
GWHAAZE00000007	CDS	51677567	51677743	-
GWHAAZE00000007	CDS	51677040	51677411	-

Transcript Sequence
>GWHTAAZE024949 ATGGAAGAAACATCAACCTTTCTTTCAACAAAGAGGTATGCAGTAGTGACGGGAGGAAATAAAGGGATAGGATTGGAAATATGTAAGAAGTTAGTTTCAAATGGGGTCAAAGTAATATTGACCTCTAGAGATGAAAAGAAGGGTATTGAGGCTGTTAAAAATTTAAGAGGATGTGGGCTCTCTGATTATGTGACTTTTCAGCAGCTTGATGTGGTGGACCCATCTAGTATATCTTCTTTGGCACATTTTGTCAAGACCCAATTTGGGAAACTTGATATATTGGTGAACAATGCAGCAATTGTTGGAGTAAGGGTTGATAGTGATGCTGTTGGAGCTTCAATAAATGGTTGGAAAGGAGCATTTATCCCATGGAAAGAGGTATCAACTCAGACGTATAATTTGGCAGAAGAATGCTTAAAAACAAATTATTATGGAGCTAAAAGAATGATTGAAGAATTTATTCCCCTTCTTCAATTATCTGATTCCCCAAGGATTGTTAATGTCTCCTCCGCTTCTGGGAAACTAAAGTTTATATCCAATGAATGGGCTAAAGAAGAATTAGGAAATGCTGTAAGCCAAGAGAGAGTAGATGAAGTATTGAGTGAATTTCTCAAAGATTTCAAAGAGGGCAATTTAAAAGCCAAAGGATGGCCTCTTGCTATCTCAGCTTATGTATTATCAAAAGCGGCCCTGAATTCTTACACTAGGATAATTGCGAAAAAATACCCGGATTTTATCGTAAACTCAGTTTGTCCCGGCTACGTGAAAACGAGTTTAAACTTGGATTATGGCATTTTAACAGTCGAAGAAGGTGCTGAAAGTCCCGTAAAGCTAGCCTTGTTGTCAAAGGACGGGCCTTCGGGTAAATTCTTTTCAAGGATGGAAATTTCGGATTTTTGA

Network for GWHGAAZE024915

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	13	178	5.50E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.180
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	0.063
	SRR3591710	White floral bud	0.855
	SRR3591711	White flower	0.053
	SRR3591712	Green floral bud	0.954
	SRR3591713	Yellow flower	0.353
SRP173429	SRR8316895	Juvenile bud stage	0.216
	SRR8316896	Juvenile bud stage	0.499
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.212
	SRR8316900	Third green stage	0.713
	SRR8316901	Third green stage	0.681
	SRR8316898	Complete white stage	0.240
	SRR8316899	Complete white stage	1.061
	SRR8316903	Complete white stage	0.366
	SRR8316902	Silver flowering stage	0.303
	SRR8316904	Silver flowering stage	0.176
	SRR8316905	Silver flowering stage	0.076
	SRR8316906	Gold flowering stage	0.457
	SRR8316907	Gold flowering stage	0.480
	SRR8316908	Gold flowering stage	0.335
SRP132670	SRR6706286	Control	0.088
	SRR6706287	Light intensity 50%	0.103
	SRR6706288	Light intensity 20%	0.168
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.309
	CNS0095593	Slightly white alabastrum(diploid) 2	0.299
	CNS0095594	Slightly white alabastrum(diploid) 3	0.066
	CNS0095595	Whole white alabastrum(diploid) 2	0.935
	CNS0095596	Whole white alabastrum(diploid) 3	1.652
	CNS0095597	Whole white alabastrum(diploid) 4	0.687
	CNS0095598	Silvery flower (diploied) 1	0.646
	CNS0095599	Silvery flower (diploied) 2	0.941
	CNS0095600	Silvery flower (diploied) 3	0.947
	CNS0095601	Golden flower (diploid) 1	0.509
	CNS0095602	Golden flower (diploid) 2	0.633
	CNS0095603	Golden flower (diploid) 3	0.749
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.063
	CNS0095612	Silvery flower (tetraploid) 3	0.142
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.224
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.050
	CRR073298	Stem 2	0.097
	CRR073299	Stem 3	0.030
	CRR073300	Leaf 1	0.640
	CRR073301	Leaf 2	0.198
	CRR073302	Leaf 3	0.166
	CRR073303	Juvenile bud 1	0.323
	CRR073304	Juvenile bud 2	0.402
	CRR073305	Juvenile bud 3	0.359
	CRR073306	Third green 1	0.087
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.088
	CRR073310	Second white 2	0.201
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.105
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.097
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.076