Detail information of GWHGAAZE024911


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010255444.10PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nelumbo nucifera]
COGYP_003640197.12E-85DEAD/DEAH box helicase
Swissprottr|Q8RXK6|RH8_ARATH0DEAD-box ATP-dependent RNA helicase 8
trEMBLtr|A0A067KA17|A0A067KA17_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP28654.1}
TAIR10AT4G00660.20RNAhelicase-like 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5163065651640707-
GWHAAZE00000007mRNA5163065651640707-
GWHAAZE00000007exon5163065651631303-
GWHAAZE00000007exon5163303851633160-
GWHAAZE00000007exon5163377151633844-
GWHAAZE00000007exon5163392051634008-
GWHAAZE00000007exon5163477851634958-
GWHAAZE00000007exon5163503851635289-
GWHAAZE00000007exon5163615351636391-
GWHAAZE00000007exon5163682051637054-
GWHAAZE00000007exon5163829551638355-
GWHAAZE00000007exon5164046351640537-
GWHAAZE00000007exon5164061651640707-
GWHAAZE00000007CDS5164061651640707-
GWHAAZE00000007CDS5164046351640537-
GWHAAZE00000007CDS5163829551638355-
GWHAAZE00000007CDS5163682051637054-
GWHAAZE00000007CDS5163615351636391-
GWHAAZE00000007CDS5163503851635289-
GWHAAZE00000007CDS5163477851634958-
GWHAAZE00000007CDS5163392051634008-
GWHAAZE00000007CDS5163377151633844-
GWHAAZE00000007CDS5163308251633160-
GWHAAZE00000007three_prime_UTR5163303851633081-
GWHAAZE00000007three_prime_UTR5163065651631303-
Transcript Sequence

Network for GWHGAAZE024911

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD1092735.00E-44
PF00271.32Helicase_C3104165.00E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12614DDX6, RCK, DHH1 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.824
SRR3591706second leaf21.926
SRR3591707mature leaf25.076
SRR3591708Shoot apex42.669
SRR3591709Stem35.041
SRR3591710White floral bud33.655
SRR3591711White flower50.583
SRR3591712Green floral bud45.399
SRR3591713Yellow flower39.877
SRP173429 SRR8316895Juvenile bud stage 28.860
SRR8316896Juvenile bud stage 35.290
SRR8316897Juvenile bud stage 18.425
SRR8316894Third green stage 16.237
SRR8316900Third green stage 38.488
SRR8316901Third green stage 37.797
SRR8316898Complete white stage 13.801
SRR8316899Complete white stage 49.154
SRR8316903Complete white stage 25.958
SRR8316902Silver flowering stage19.241
SRR8316904Silver flowering stage26.082
SRR8316905Silver flowering stage11.390
SRR8316906Gold flowering stage 34.753
SRR8316907Gold flowering stage 32.843
SRR8316908Gold flowering stage 39.114
SRP132670SRR6706286Control17.316
SRR6706287Light intensity 50%18.511
SRR6706288Light intensity 20%20.567
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.401
CNS0095593Slightly white alabastrum(diploid) 229.077
CNS0095594Slightly white alabastrum(diploid) 331.015
CNS0095595Whole white alabastrum(diploid) 224.348
CNS0095596Whole white alabastrum(diploid) 325.359
CNS0095597Whole white alabastrum(diploid) 423.972
CNS0095598Silvery flower (diploied) 133.521
CNS0095599Silvery flower (diploied) 228.942
CNS0095600Silvery flower (diploied) 343.974
CNS0095601Golden flower (diploid) 127.328
CNS0095602Golden flower (diploid) 242.517
CNS0095603Golden flower (diploid) 341.027
CNS0095604Slightly white alabastrum(tetraploid) 131.087
CNS0095605Slightly white alabastrum(tetraploid) 226.152
CNS0095606Slightly white alabastrum(tetraploid) 348.104
CNS0095607Whole white alabastrum(tetraploid) 121.892
CNS0095608Whole white alabastrum(tetraploid) 218.389
CNS0095609Whole white alabastrum(tetraploid) 330.953
CNS0095610Silvery flower (tetraploid) 138.650
CNS0095611Silvery flower (tetraploid) 236.515
CNS0095612Silvery flower (tetraploid) 337.375
CNS0095613Golden flower (tetraploid) 127.143
CNS0095614Golden flower (tetraploid) 234.801
CNS0095615Golden flower (tetraploid) 340.702
CRA001975CRR073297Stem 114.217
CRR073298Stem 212.469
CRR073299Stem 312.662
CRR073300Leaf 114.517
CRR073301Leaf 210.461
CRR073302Leaf 38.790
CRR073303Juvenile bud 18.747
CRR073304Juvenile bud 28.425
CRR073305Juvenile bud 313.564
CRR073306Third green 16.659
CRR073307Third green 25.177
CRR073308Third green 37.048
CRR073309Second white 113.487
CRR073310Second white 210.823
CRR073311Second white 315.006
CRR073312Silver flowering 112.643
CRR073313Silver flowering 213.385
CRR073314Silver flowering 39.703
CRR073315Gold flowering 16.535
CRR073316Gold flowering 210.482
CRR073317Gold flowering 38.461
CRR073318Tawny withering 114.422
CRR073319Tawny withering 215.408
CRR073320Tawny withering 314.332