Gene detail

Detail information of GWHGAAZE024898

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28638.1	5.9597E-162	hypothetical protein JCGZ_14409 [Jatropha curcas]
COG	YP_169256.1	1E-13	L-glutamine synthetase
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	4E-22	Serine/threonine-protein kinase EDR1
trEMBL	tr\|A0A067K0Q0\|A0A067K0Q0_JATCU	2E-162	Uncharacterized protein {ECO:0000313\|EMBL:KDP28638.1}
TAIR10	AT4G18950.1	6E-60	Integrin-linked protein kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51449525	51457657	+
GWHAAZE00000007	mRNA	51449525	51457657	+
GWHAAZE00000007	exon	51449525	51449671	+
GWHAAZE00000007	exon	51452118	51452441	+
GWHAAZE00000007	exon	51452557	51452631	+
GWHAAZE00000007	exon	51452997	51453077	+
GWHAAZE00000007	exon	51453274	51453368	+
GWHAAZE00000007	exon	51453621	51453741	+
GWHAAZE00000007	exon	51453823	51453902	+
GWHAAZE00000007	exon	51454973	51455085	+
GWHAAZE00000007	exon	51455182	51455267	+
GWHAAZE00000007	exon	51456409	51456446	+
GWHAAZE00000007	exon	51456606	51456809	+
GWHAAZE00000007	exon	51457528	51457657	+
GWHAAZE00000007	five_prime_UTR	51449525	51449671	+
GWHAAZE00000007	five_prime_UTR	51452118	51452210	+
GWHAAZE00000007	CDS	51452211	51452441	+
GWHAAZE00000007	CDS	51452557	51452631	+
GWHAAZE00000007	CDS	51452997	51453077	+
GWHAAZE00000007	CDS	51453274	51453368	+
GWHAAZE00000007	CDS	51453621	51453741	+
GWHAAZE00000007	CDS	51453823	51453902	+
GWHAAZE00000007	CDS	51454973	51455085	+
GWHAAZE00000007	CDS	51455182	51455267	+
GWHAAZE00000007	CDS	51456409	51456446	+
GWHAAZE00000007	CDS	51456606	51456809	+
GWHAAZE00000007	CDS	51457528	51457657	+

Transcript Sequence
>GWHTAAZE024932 CCATTTTTACAATTTGCAGTTTTGTCTCTAACTTCATTCATCCTCGCTGATGAGTAGTATATAAGCTAAGTTTCAGTGATTTATTACACTCTTTAGTTTCACTTTCATATTTTATACATTACTAATTTTGGAGCCTGTTTCTCTTGGCCTCATTTTTTGTGGTACTTTAAAAACCATATTGTGTTACCCTGATTCTTAAGAAGGAATTTTGTTTTTTAATCACTATTTTTTTAGCGGCAGATGCAACAGAGAAATGGCTCAGAAGGTTTATTCCGCCTTCTCTACTGCTCGGGCAAAGGTGACATTGAGGGTCTGACACAGGAGCTAGAGAAAGGAATAGAACCCAATCTGTACGACTTTGATAAGCGAACAGCTCTTCATTTAGCAGCTTGCGAAAATTGCACAGAGATTGTTGTCTTACTTCTCGACAAGGGAGCCGATGTGAACTCTCTTGATCGGTGGGGTCGTACTCCACTATCAGATGCTCGTAACTCTGGCCACGAGGAGATCTGCAAAATTCTAGAGGCACATGGTGGAATTGATCCGATGGGACATGATTCTCATAGTCCATGTTATGAAATTGATCACATCGAGGTTAACATGAATGAAGCAACTCTTATCGGACAAGGTGAATATGATGAGGTTTATTTAGTAAAATGGCGTGGTACGGAAGTTGCTGCAAAAACCATCCGCTCTTCAATTGCATCAAACTCAATGGTGAAGAATAACTTTCTTAGGCAACTTGCTTTATGGCAGAAGTTGCGTCACCCTAATATAGTGCAGTTCCTTGGTGTTCTAAGGGATTGTGACCGTTTGATCTTCCTTATTGAGTATCATAAAAGAGGAAGTTTGTATGATATTTTAAGAAAGAAAGGAAGACTAGATTCATTGACGGCTGTTTCTTATGCTTTAGATATTGCGAGAAGCGTGTTGCTAGATGAAGGAGGCCACCTTCGAGTGACGGACTTTGGCTTCAGCATATTTGCAGAGGACCAAGAGGCTTCTGGTTTCAAATTTCCTGGCGGAAGAGGATCATATTGGTACATGGCTCCTGAAGTTTATCGTCGAGAATCATATGGGAAGAGCGTTGATGTCTTTTCATTTGCTGTTATCTTACACGAGGAGAAGTATGAGAGATCCAGGGAGAAGTATGGATCTGGATCTGAAATCTGGCATGGTATCTGGATGGCGCTGCGAGAGGGCGCGCCGGAGGGATTCGGAGATGCGCGTAGTGGCGCGGTTGTTGTTGTTGATGAAGTAGGTGCGGCGGAAGAAGCTGGCAGCGAAGCTACCGGAGTTCGCGGTCGGAGAAATAGTCGGCGACGATGCCGGGGATTGAGAAACAGTAGAGGCCTTGGATGCAGGCTTATTCAAGAATGCTGGCACAAGAATCCGGATTGTCGGCCTACATTTGAAGAAATAATTGTGCATCTTGAGGTAATACAGGAGCAATTGTTTGGGATGGCCAATGGAGCCTGCTGCATCTATCTGTGA

Network for GWHGAAZE024898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	16	102	1.20E-11
PF00069.26	Pkinase	123	397	2.70E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.287
	SRR3591706	second leaf	10.502
	SRR3591707	mature leaf	7.658
	SRR3591708	Shoot apex	20.042
	SRR3591709	Stem	13.792
	SRR3591710	White floral bud	19.720
	SRR3591711	White flower	15.521
	SRR3591712	Green floral bud	12.385
	SRR3591713	Yellow flower	6.931
SRP173429	SRR8316895	Juvenile bud stage	28.197
	SRR8316896	Juvenile bud stage	49.911
	SRR8316897	Juvenile bud stage	30.072
	SRR8316894	Third green stage	17.132
	SRR8316900	Third green stage	18.419
	SRR8316901	Third green stage	25.920
	SRR8316898	Complete white stage	8.383
	SRR8316899	Complete white stage	23.965
	SRR8316903	Complete white stage	14.511
	SRR8316902	Silver flowering stage	4.961
	SRR8316904	Silver flowering stage	6.172
	SRR8316905	Silver flowering stage	3.212
	SRR8316906	Gold flowering stage	9.430
	SRR8316907	Gold flowering stage	12.328
	SRR8316908	Gold flowering stage	14.224
SRP132670	SRR6706286	Control	26.061
	SRR6706287	Light intensity 50%	25.969
	SRR6706288	Light intensity 20%	26.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.391
	CNS0095593	Slightly white alabastrum(diploid) 2	24.064
	CNS0095594	Slightly white alabastrum(diploid) 3	28.389
	CNS0095595	Whole white alabastrum(diploid) 2	16.040
	CNS0095596	Whole white alabastrum(diploid) 3	13.479
	CNS0095597	Whole white alabastrum(diploid) 4	13.025
	CNS0095598	Silvery flower (diploied) 1	25.166
	CNS0095599	Silvery flower (diploied) 2	20.059
	CNS0095600	Silvery flower (diploied) 3	5.107
	CNS0095601	Golden flower (diploid) 1	20.054
	CNS0095602	Golden flower (diploid) 2	9.540
	CNS0095603	Golden flower (diploid) 3	9.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.984
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.591
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.961
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.826
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.485
	CNS0095610	Silvery flower (tetraploid) 1	18.900
	CNS0095611	Silvery flower (tetraploid) 2	7.818
	CNS0095612	Silvery flower (tetraploid) 3	14.950
	CNS0095613	Golden flower (tetraploid) 1	8.702
	CNS0095614	Golden flower (tetraploid) 2	10.673
	CNS0095615	Golden flower (tetraploid) 3	6.305
CRA001975	CRR073297	Stem 1	36.023
	CRR073298	Stem 2	50.905
	CRR073299	Stem 3	15.053
	CRR073300	Leaf 1	22.694
	CRR073301	Leaf 2	26.687
	CRR073302	Leaf 3	8.265
	CRR073303	Juvenile bud 1	7.393
	CRR073304	Juvenile bud 2	5.539
	CRR073305	Juvenile bud 3	6.699
	CRR073306	Third green 1	4.266
	CRR073307	Third green 2	2.408
	CRR073308	Third green 3	2.503
	CRR073309	Second white 1	2.011
	CRR073310	Second white 2	1.390
	CRR073311	Second white 3	0.838
	CRR073312	Silver flowering 1	0.342
	CRR073313	Silver flowering 2	0.614
	CRR073314	Silver flowering 3	1.420
	CRR073315	Gold flowering 1	7.363
	CRR073316	Gold flowering 2	8.366
	CRR073317	Gold flowering 3	6.650
	CRR073318	Tawny withering 1	4.078
	CRR073319	Tawny withering 2	9.992
	CRR073320	Tawny withering 3	3.275